LOC111195056


Basic Information

Item Value
gene id LOC111195056
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 16272657 ~ 16278281 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651446.1
gtataatattggtctttagaggctcagatgtgttccctctgtaaaacacactaaaaacagCTCTGATTCGGTGACAGGTTAGTGGACATTTAGTCTTGAAgggaaaacattattattttaatacattcgAAGctcgtgctataatgtgtaatattggcactgcttttataaaatatttcacCTGGTTTAAACTTGTAATCCCCTCTAGCACCCCCTTTAGGCAGGTACATAAATATTTACAACATCTCAGAACTGtcgaaaacaaataaaataaccctAAATAAAAGCCCCTTCTTTTTTAAGCGTGTGCTTTTATTCACCGGTTTGAGCTTTGCTGGCATTATCCCTCACTCCCGCTTCCCGTCACTTATCCTCAATTACGTAAGCAACTGTAATCTAGCGGTGGAACAGTCTGACGCTGTTTCGGTTCTCTCAGGAATAAAAAATGGGAGATAATGTTGATTAAGGTAGAGCTCATGCTGGTGCGTCTCGCTGAAAAGGCACCTGCTTTTCAGAGGCTATTATTTTCCGCTGCGACAGTAAACAAGCAGCCCACCTGCTATGAGCTAGCGGAGTTAGCACACTTAGCTCAGCTGTGCGCCGGCTTTGTTGGCTCAATAAGGCTGGTGAGCTTGCagctgATCCAGGACTGAGGGTTTTGTTCTGCTGTGGAGACAGAAATCAAAGGGCAGCTGAGGAAAAACCAACACCTATCCAAACACTGCCGTGATCCTGACAGGCCACAATAACTGAAACGCCAGCTCGTATCAGCCAGGCCCATTCAGCGCTCCGTTACTTAGCACACCAGCCGTTTTACAGCCGGTGATAATGACCCGGGAGAGATTAGGGCTGGTTTCTGAGCGATGGTTATCAGCGCCGTATCGGCTCTAGGGCCGGCGTTCGGGTTTTTACTCTAAATGGTGAGGGATGTTTTGGAGTGCTGGACCCTGACTGCTCTTATTACAGCCCGTCCTGTGGTGTGACCTCTTTCTCTGAGGCTAAAaccctttaataaatgaaataagacGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651446.1 True 1030 lncRNA 0.45 2 16272657 16278281

Neighbor

gene id symbol gene type direction distance location
LOC103044056 NA coding upstream 237093 16022161 ~ 16035564 (+)
rusc2 NA coding upstream 264201 15992313 ~ 16008456 (+)
LOC103046796 atp8b5b,LOC108427255,LOC108277118,LOC107713374,LOC107686462,LOC107744118 coding upstream 287285 15943630 ~ 15985372 (+)
LOC111195055 NA coding upstream 392036 15872252 ~ 15880621 (+)
LOC103024827 NA coding upstream 771342 15497479 ~ 15501315 (+)
sppl3 sppl3 coding downstream 78902 16357183 ~ 16404802 (+)
LOC103042004 kcnn2,LOC108435393,LOC108276576,LOC106564970,LOC100135971,LOC106563202 coding downstream 287468 16565749 ~ 16654846 (+)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 coding downstream 399215 16677496 ~ 16685482 (+)
slc20a1 slc20a1,slc20a1b,LOC107555522,LOC107687859,LOC107713386 coding downstream 458631 16736912 ~ 16768304 (+)
ggcx ggcx,LOC107744113,LOC107569403,LOC107686456,LOC107688460 coding downstream 567665 16845946 ~ 16862878 (+)
G176602 NA non-coding upstream 85612 16186673 ~ 16187045 (+)
G176582 NA non-coding upstream 129685 16142530 ~ 16142972 (+)
G176579 ywhah,LOC108427260,LOC107744159,LOC107562560,LOC107713377,LOC107555530 non-coding upstream 139260 16130492 ~ 16133397 (+)
G176561 NA non-coding upstream 243280 16027396 ~ 16029377 (+)
G176549 NA non-coding upstream 398225 15873036 ~ 15874432 (+)
G176688 NA non-coding downstream 50259 16328540 ~ 16328832 (+)
G176692 NA non-coding downstream 56730 16335011 ~ 16409408 (+)
G176700 NA non-coding downstream 147389 16425670 ~ 16425881 (+)
G176811 NA non-coding downstream 393700 16671981 ~ 16672464 (+)
G176816 NA non-coding downstream 424565 16702846 ~ 16710537 (+)
LOC103047397 unc13b,LOC107686461,LOC107688005 other upstream 299000 15794264 ~ 15973657 (+)
LOC103039555 LOC108415819 other upstream 2203295 13951405 ~ 14069362 (+)
LOC103038733 bcl7b other upstream 2383613 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other upstream 2403802 13847262 ~ 13868855 (+)
G175900 NA other upstream 2587094 13679359 ~ 13685563 (+)
fam136a fam136a,LOC102792467 other downstream 542654 16820935 ~ 16824328 (+)
G176882 inpp5j other downstream 764554 17042835 ~ 17046989 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 1860431 18138712 ~ 18174518 (+)
G177219 NA other downstream 1945992 18224273 ~ 18226133 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other downstream 2046592 18324873 ~ 18330489 (+)

Expression


Co-expression Network