LOC111195060


Basic Information

Item Value
gene id LOC111195060
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18620199 ~ 18624721 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651450.1
GCATCAGCCCAGTTCAACCCGTGCGGTTTCTCGTAGCACTTGGCGCGCGGATTCCTCAAACATTACAACGTTCCTCAACTGTCAGCTATCCTGAAACCTTTGAAGTTTGTAGAGCTCTGAAAGAGTACATTTTAAGTGGAACATTTACTCCAccatgcaacaaaaaaatgcGCAAGGAAATGCGGCGTGTGTCTGAAAACTTCATAGCAAAAGACAACCGATTGTTTTACACTGGACCAAATAAAACGTATATGAGACTAGTTGTTTGTACtgaggaggaaaaaaaggtCTGTTTTGATGGAGTGCCACCGGCAACCACAACGGTGTACGAGGCACGAGAGACAGGGTGATTGCTGGATACTTCTGGCCTACCCTAATGAAAGATGTAACTGAGTGGgtgaagTGTTGTCGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651450.1 True 415 lncRNA 0.46 4 18620199 18624721

Neighbor

gene id symbol gene type direction distance location
pcna pcna,LOC107658578,LOC107583397 coding downstream 11066 18604544 ~ 18609133 (-)
LOC103026456 kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 coding downstream 24385 18579751 ~ 18595814 (-)
LOC103025819 rassf2 coding downstream 42434 18571229 ~ 18577765 (-)
LOC103025514 NA coding downstream 50137 18565701 ~ 18570062 (-)
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding downstream 138083 18459004 ~ 18482116 (-)
LOC103045069 bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342 coding upstream 24065 18648786 ~ 18684766 (-)
LOC103045381 LOC108440153 coding upstream 61949 18686670 ~ 18691097 (-)
LOC103045990 aak1b,LOC108440145,LOC107583399 coding upstream 121527 18746248 ~ 18791052 (-)
brf2 NA coding upstream 216350 18841071 ~ 18847381 (-)
LOC103028676 NA coding upstream 223274 18847995 ~ 18870141 (-)
G177596 NA non-coding downstream 54886 18561352 ~ 18565313 (-)
G177589 NA non-coding downstream 69332 18549010 ~ 18550867 (-)
G177584 NA non-coding downstream 82512 18534885 ~ 18537687 (-)
G177559 NA non-coding downstream 271545 18348298 ~ 18348654 (-)
G177555 NA non-coding downstream 281367 18338544 ~ 18338832 (-)
G177605 NA non-coding upstream 1568 18626289 ~ 18626532 (-)
G177607 NA non-coding upstream 4578 18629299 ~ 18629554 (-)
G177609 NA non-coding upstream 7693 18632414 ~ 18632670 (-)
G177626 NA non-coding upstream 112143 18736864 ~ 18740579 (-)
G177617 NA non-coding upstream 118789 18743510 ~ 18798134 (-)
LOC111195059 NA other downstream 1587 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 88564 18485642 ~ 18531635 (-)
G177568 NA other downstream 217191 18397582 ~ 18403008 (-)
G177526 NA other downstream 445674 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2829555 15780555 ~ 15790644 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 262307 18887028 ~ 18934600 (-)
G177704 NA other upstream 466425 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 495065 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 1113928 19738649 ~ 19739313 (-)
G178173 NA other upstream 2666801 21291522 ~ 21295833 (-)

Expression


Co-expression Network