LOC111195061


Basic Information

Item Value
gene id LOC111195061
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19075247 ~ 19076916 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651452.1
tctcttttttcctctctctttctctctctcttttctctctttttccaggAATCCATCTTTGTCCTGGCAAACTAGGTCATGGCACACCCATATCACAGCATTTTACTCTACTTTCTCACAGTGAAATGCTACTGAATAAACAGCTGATTGACAAAAACAAAcgttttagaaagaaaaagagaaaaaaatacacatgcAAATGTTACCATCAGCTGCGTAGGCAGGCCCTCCCCTGCGCAAGGCCGAGCATGTGAATGTGCCTAAGAGATACATGGCACTGAGTGATGGCTGCTCTCTACCTTTCTCATTTTTCTACACTCAGCCTGCTGTTTATCTATTTAAACTCATTTCAgaggaaacagaaaaaaaaatcaggccaGAGGAAAAAAGGTCGACGGCCTTTCACAAAGGAAAGGAAGAAATGCTGAATCACAGCCTGTGGTTGTTCTGCTAAAACCCTGTAACTCGTTTTACAGAAACTgccactgtgtttttattgatcAGCCTGTTTATTCAGTTGATTAATCTCCTAGTAGTGTTTACTACAGTAAAGGACTTTTTCAGGATTAtgtaatgatattaataatccATCAGTCGTacttcaaaacaaaaaataagacaaTTAAAATTCTTTCTAAAGCATTCTTAACCCGTTTGACCTTGAGTCAAGGGCACATTCTCATATCTGTAATTTTCCCCTCATCCTGCAGAACATTATCtaccctgctgctgctgaaccacCGAGATCAGCCCGAGAACACAACCCGTAAAAAGCCCATTGAGGATATTTACCTTCGCCTTTCTGCTGAAATAATTTTATCAGGCCTAAAGGCAGGAGACTGTACGCTTTCACTCCCATCGCCGTCCTGTAACTCGACTGATTTAGATAAAAGGAGGTCAGACCCGCTCTAAATCCTCCTTTAtcaattcatattaaaaataaaatatcagcaGTGAAGGAGCCACAGAGCGCAGACTGAGGAGCCAAACTGCTGCAAATCAGCTGCAAAAATTActtttacagaaaatagatatgcaaatcatctctctctctttttccttctcaCTGTCTCCTCGCCCTtccttcagtctctctctctttttcctgctCAAGCATTTGCTGTTCATTTTTTAGACAGCAGCATGTTCACATTTCCATCTGTGGGCTGGGGACTGCCTGTTTTTATTGATAAGGTAACAAtgatgacaataaaaaacattttactgttATATAGCCATTAGGCATAGgaataacattatttttaccATACCTGCACATACTTTGCACTATACACATACTGTTTTATGttaatcttatatatatattttcaattggtttgtttttctttgcatttcttaatatttttatgtacacATAATATTAGATTGTTAATGCTCATTTATGTACTTCTTTCTGCAATAGGTACATTTCCttttaataaagtgatctgTCTGCCAATCTGTTTATCTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651452.1 True 1475 lncRNA 0.38 2 19075247 19076916

Neighbor

gene id symbol gene type direction distance location
rhof rhof,LOC108425170,LOC105014892,LOC106568222 coding downstream 2718 19063550 ~ 19072529 (-)
LOC103031534 NA coding downstream 18995 19052991 ~ 19056252 (-)
LOC103030174 NA coding downstream 26911 19038310 ~ 19048336 (-)
LOC103029848 ggt1 coding downstream 69386 18994874 ~ 19005861 (-)
LOC103029209 gpat4,LOC108440151,LOC108277038,LOC107746208,LOC107558124 coding downstream 192076 18873117 ~ 18883171 (-)
LOC103047211 LOC108425134 coding upstream 22946 19099862 ~ 19106136 (-)
dgcr2 dgcr2 coding upstream 35118 19112034 ~ 19121657 (-)
dusp11 NA coding upstream 52291 19129207 ~ 19133378 (-)
LOC103036397 march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990 coding upstream 81186 19158102 ~ 19162507 (-)
LOC103047514 NA coding upstream 105333 19182249 ~ 19185669 (-)
G177678 NA non-coding downstream 87832 18983812 ~ 18987415 (-)
G177669 NA non-coding downstream 120307 18950852 ~ 18954940 (-)
G177644 NA non-coding downstream 245960 18827603 ~ 18829287 (-)
G177617 NA non-coding downstream 277113 18743510 ~ 18798134 (-)
G177626 NA non-coding downstream 334668 18736864 ~ 18740579 (-)
LOC103033103 NA non-coding upstream 655 19077571 ~ 19077976 (-)
G177685 NA non-coding upstream 33245 19110161 ~ 19159146 (-)
G177717 NA non-coding upstream 67362 19144278 ~ 19147039 (-)
G177728 actr1b,actr1,LOC108425179,LOC103036907,LOC107588989,LOC107658603,LOC107602067,LOC106563059 non-coding upstream 84701 19161617 ~ 19164767 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding upstream 89174 19166090 ~ 19168529 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 140647 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 456635 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 543612 18485642 ~ 18531635 (-)
G177568 NA other downstream 672239 18397582 ~ 18403008 (-)
G177526 NA other downstream 900722 18171849 ~ 18174525 (-)
G177704 NA other upstream 14230 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 42870 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 661733 19738649 ~ 19739313 (-)
G178173 NA other upstream 2214606 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2856603 21933519 ~ 21933831 (-)

Expression


Co-expression Network