LOC111195062


Basic Information

Item Value
gene id LOC111195062
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19526927 ~ 19551020 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651454.1
GAATGACGTCACGAGCTCATTTCTGTTTCTCCACCGCTTTTGGTGGGTTGTGGTTAGGTTTAGGCAGCGGCCAGCAGATGGCGCTGCATCTCACAGTTTCCCCGCTCAGCGCCGCCGCTGCTGCCTGTTTTcagcccctctctctccctctctgcgCTGCATCACTTTACACTGAGTCCTCGCTCTGAGCTCCCCGTGTCCGCGTCCACCCGCCGCTTCTTCAGGGTGTGCAGCCACTTCTGCTTCACCGCTGGACCCGTGTTTATGTCCCACGCTCTTCAGAGGGAAGCAGTGGGAGGTTGTGAGGAGAGTTAGccggctgtgtgtgtgggtgcggCGCGCTGTGATCTCTATATAAACCGCTGTGGAGGATTTTTCTCTCGCTTCTCCTCTGGTACATGGCTCCGGTTGTTGTGCTGCTGTGCGCTGTGTGGACGCGGTTTCAGCCCGTTTTCTGGAGCTCCGCGCTCTGAGCGAGCTCTGCTGGAGTTCTGCGGATCTGAGAACACTCTGACCGGGGAGATTAAGGTGGTCTGGgggctgtgttttgtgtttgtgctcGAGTTTGGGAGGAAAACTTGAGCGGTGAACTTTAGAGAGGTGGTGCTCTGTTCCTGATTGACTAACACAGAGTGTATAGCGTTAAGCAGGCTAacgctagttagcttagcatgcctgctagttagctagctagctaaccctcCTTAACAGCCAGCCCGTGTGAACCGCGCGATGCCTTTGTGTGAACAGCTCATGTGGATTTAAAGTATTCGCTTTTCTTCTAATTAAACGAACCCGGAGGATTACGGAGAGCTGCTGGATAAATAAGATAAAGACCTGTGCTGCTGTTCACTGGATGCACCTCTGGCCTCAAACTGGGATCCTGAAACCTGGCCTATAGATGACAAGGTAACAGAGCTGTTcagtgtcatttagagctttggCGGTTCagaactgcagagactgaaacaGATTTCAGTACAAGAGccctttttttacttaatttctattttttagcCTAAATAATGTTGGAactcaatttcaatttcaatgcGCTTGACTTTAAGTTCTGTCTGATTCAGTACAAGTGTTCATGTTGGTGTGTCTTGGTGGAAATCTTTTCTCTGATAATTGTTTCTTTGATAAAGCTGAAAAAGCTTGAGTGCAGCATAATAACTGGTGGTTGAGTTGTTGATTTGTACAATTATACTTTCACCCCTCTTCACActgattttcagtgttttcagactaaaatataacaaacaGTTATATATACTCCTAACAAACAGTATTTTTGTCAAACCAACAGCTAATAGCATTGGCTCACTCAATTACAAACTTACACAATTGTAAGATGTGAACTGGGATCAGGATTGATTGCGTTTAGGGGATTTTTGATTGAGTGCAAGCTGTGGACTGGAATCTGTGTCAGAAATGCcacttttccaccaacaaagtaCTGGTGCTGGAGCCGGTGCCAGTTCCTGTGAACCTGCAAACCTTTTTAGAAAGGTGTTCACACTGCTTtaacagggttcatacggtcatgaaaaacctggaaaaatcatggaatttGAACATAGCAATTTCCAGTCCTggataaattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651454.1 True 1607 lncRNA 0.47 2 19526927 19551020

Neighbor

gene id symbol gene type direction distance location
nln nln,LOC107705053,LOC107667266,LOC107548669 coding upstream 4854 19503557 ~ 19522073 (+)
trappc13 trappc13,LOC107667267 coding upstream 51750 19459956 ~ 19475177 (+)
ppwd1 ppwd1 coding upstream 81269 19432487 ~ 19445658 (+)
cwc27 cwc27,LOC102784682 coding upstream 201526 19261204 ~ 19325401 (+)
fam159b NA coding upstream 272120 19252744 ~ 19254807 (+)
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding downstream 43081 19594101 ~ 19651418 (+)
LOC103023409 co-prmt,LOC108428880 coding downstream 345717 19896737 ~ 19918977 (+)
pum3 pum3,k0020,LOC107705054,LOC107742987 coding downstream 368857 19919877 ~ 19932820 (+)
LOC103030097 NA coding downstream 598238 20149258 ~ 20150118 (+)
LOC103027562 NA coding downstream 601441 20152461 ~ 20155315 (+)
G177506 NA non-coding upstream 32553 19494175 ~ 19494374 (+)
G177485 NA non-coding upstream 47085 19411626 ~ 19479842 (+)
G177479 NA non-coding upstream 125246 19397948 ~ 19401681 (+)
G177472 NA non-coding upstream 168178 19353968 ~ 19358749 (+)
G177449 NA non-coding upstream 310807 19214411 ~ 19216120 (+)
G177819 NA non-coding downstream 188360 19739380 ~ 19739598 (+)
G177822 NA non-coding downstream 190604 19741624 ~ 19741851 (+)
G177826 tjp2 non-coding downstream 224820 19775840 ~ 19779536 (+)
G177830 NA non-coding downstream 244124 19795144 ~ 19833110 (+)
G177833 NA non-coding downstream 267213 19818233 ~ 19818710 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 968483 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1196438 18324873 ~ 18330489 (+)
G177219 NA other upstream 1300794 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 1352409 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 2479938 17042835 ~ 17046989 (+)
LOC111194983 NA other downstream 169281 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 199922 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 538218 20089238 ~ 20096711 (+)
G177950 NA other downstream 587802 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 845357 20396377 ~ 20399165 (+)

Expression


Co-expression Network