LOC111195064


Basic Information

Item Value
gene id LOC111195064
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20105334 ~ 20123848 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651457.1
GTTACATTCAAAGCATGTGTGCGCTGATGATGGAACCTGATTGGATGCCATGATCCTGAatgatacatatataaatacatcgAGTTTTTAAGTTATGTTAGATGAATGGCTTGTTGCTGTTTTGATGGACAAAGCTGAAGAATGAAGAGGTTTATTGTTGCATTGGTGTTTCTGGCTGTGGGTTCCTCTGCACCTGTGGAGCAAGTCAGTGAGAGAGATAATGTGCCAACTTTTGAAGCGGAGCAGAGGCCCTTGGGTCCACCATTGGCTCAAATAGTACCAGGAACTCGGACCATCTACTACCCCATTCAGTCTGACTATCTATTATCTGGATTAGGTGGATTGGGTGGATTGGGTGGATTAGGAGGATTAGGTGGAATAGGTGGATTCCCGATTACCAATTCACTGTATCCTAATTACCAATGCTACCCATTCTACCCATACTGTGGTGTATACACCGTGCCACCTATCATCATCTCCGTGCCACAAGCAGCTGTCTGACCCAGCAGGTCCTTCCATCATTCTATATGAACTAGGGGAGGGCGGATCGATTTAATATATCGATAGTATCAATGCTAACATAGGTATTGGGTATTGATTGATACTTGTGTGATGAAATCAATGCTTACGTTTCAGTTTCTCTTTTGTACAACTAATTTACAGGCATTTACAGAGTGACCGACTGTCCATACAACACTATATTCTCACTTCACTCATGCTCAATTAGCCCCTCCCCTTTCCGCCCCGCCCCCATAGCATTAGAAAGGTGTGTAATGTCATTTTTCAGTGTAATTGATCATCCCAGTAATTTAGCAGACTGATTAATAGACTATTCAGACAGTCACATAGGGAATATATTCAGCCAGTTCAAATAGAACTAAATGAATTATTtcactgaaactgaaaaataGATATGCTACAAAAAGATATAGCTATGCCTCAAACCTGAACTATGAATATggctgaataaatattttatgttaactGTCAAAGgaatattaatgaaaaaagtttaattgCAAGTGCAGATGACCACCCCAAAAGTTTTCTATACACATTTCTGAgtaacttaataaaaatatttttatttgcctgAAAA
>XR_002651458.1
GAAACGCTGAAATCTGAGATCACCTGCAGATCATGGACTGACAAAGCTGAAGAATGAAGAGGTTTATTGTTGCATTGGTGTTTCTGGCTGTGGGTTCCTCTGCACCTGTGGAGCAAGTCAGTGAGAGAGATAATGTGCCAACTTTTGAAGCGGAGCAGAGGCCCTTGGGTCCACCATTGGCTCAAATAGTACCAGGAACTCGGACCATCTACTACCCCATTCAGTCTGACTATCTATTATCTGGATTAGGTGGATTGGGTGGATTGGGTGGATTAGGAGGATTAGGTGGAATAGGTGGATTCCCGATTACCAATTCACTGTATCCTAATTACCAATGCTACCCATTCTACCCATACTGTGGTGTATACACCGTGCCACCTATCATCATCTCCGTGCCACAAGCAGCTGTCTGACCCAGCAGGTCCTTCCATCATTCTATATGAACTAGGGGAGGGCGGATCGATTTAATATATCGATAGTATCAATGCTAACATAGGTATTGGGTATTGATTGATACTTGTGTGATGAAATCAATGCTTACGTTTCAGTTTCTCTTTTGTACAACTAATTTACAGGCATTTACAGAGTGACCGACTGTCCATACAACACTATATTCTCACTTCACTCATGCTCAATTAGCCCCTCCCCTTTCCGCCCCGCCCCCATAGCATTAGAAAGGTGTGTAATGTCATTTTTCAGTGTAATTGATCATCCCAGTAATTTAGCAGACTGATTAATAGACTATTCAGACAGTCACATAGGGAATATATTCAGCCAGTTCAAATAGAACTAAATGAATTATTtcactgaaactgaaaaataGATATGCTACAAAAAGATATAGCTATGCCTCAAACCTGAACTATGAATATggctgaataaatattttatgttaactGTCAAAGgaatattaatgaaaaaagtttaattgCAAGTGCAGATGACCACCCCAAAAGTTTTCTATACACATTTCTGAgtaacttaataaaaatatttttatttgcctgAAAA

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651457.1 True 1099 lncRNA 0.39 4 20121246 20123848
XR_002651458.1 False 1011 lncRNA 0.40 4 20105334 20123848

Neighbor

gene id symbol gene type direction distance location
pum3 pum3,k0020,LOC107705054,LOC107742987 coding upstream 172514 19919877 ~ 19932820 (+)
LOC103023409 co-prmt,LOC108428880 coding upstream 186357 19896737 ~ 19918977 (+)
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding upstream 453916 19594101 ~ 19651418 (+)
nln nln,LOC107705053,LOC107667266,LOC107548669 coding upstream 583261 19503557 ~ 19522073 (+)
trappc13 trappc13,LOC107667267 coding upstream 630157 19459956 ~ 19475177 (+)
LOC103030097 NA coding downstream 25410 20149258 ~ 20150118 (+)
LOC103027562 NA coding downstream 28613 20152461 ~ 20155315 (+)
smad2 smad2,LOC107743055,LOC107653131 coding downstream 105679 20229527 ~ 20257745 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding downstream 257841 20381689 ~ 20395156 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding downstream 279646 20403494 ~ 20407568 (+)
G177940 NA non-coding upstream 4532 20100576 ~ 20100802 (+)
G177885 NA non-coding upstream 110167 19990644 ~ 19995167 (+)
LOC111195063 NA non-coding upstream 149860 19949596 ~ 19955474 (+)
G177861 NA non-coding upstream 214621 19890267 ~ 19890713 (+)
LOC107197765 NA non-coding upstream 228944 19875366 ~ 19876390 (+)
G177955 NA non-coding downstream 33999 20157847 ~ 20163869 (+)
G177976 NA non-coding downstream 47437 20171285 ~ 20173721 (+)
G177995 NA non-coding downstream 75916 20199764 ~ 20203551 (+)
G177984 NA non-coding downstream 112369 20236217 ~ 20240919 (+)
G178026 NA non-coding downstream 138038 20261886 ~ 20262774 (+)
LOC103043854 NA other upstream 8623 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 329543 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 382774 19720301 ~ 19722560 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 1546890 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1774845 18324873 ~ 18330489 (+)
G177950 NA other downstream 14974 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 272529 20396377 ~ 20399165 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 2003273 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 2332471 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 2362975 22486823 ~ 22491503 (+)

Expression


Co-expression Network