LOC111195073


Basic Information

Item Value
gene id LOC111195073
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23703987 ~ 23707849 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651470.1
ttaatctacacagatttctctcctgaaaacaatttatttggGAGGCAGAGTGATGTTCCGGCCGCACGGCTCTCTCGCGGGGGACTGAGGTCAGACGGGGAACAGAGTGGAGGAAAGAGTCTAGAGAGTGTGGAGAGACGAGAAGTGCGGAGAAGACCACACTGACCATCTGTAGAAGAGTGAAGGAAACTTCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651470.1 True 196 ncRNA 0.51 3 23703987 23707849

Neighbor

gene id symbol gene type direction distance location
LOC103037096 LOC108410414,LOC108277158,LOC105901021,LOC106603263 coding upstream 13632 23541850 ~ 23690355 (+)
ppp2cb ppp2cb,LOC107758729 coding upstream 189276 23503307 ~ 23514711 (+)
LOC103034079 NA coding upstream 206369 23494154 ~ 23497618 (+)
LOC111188215 NA coding upstream 209687 23479537 ~ 23494300 (+)
purg NA coding upstream 242012 23459368 ~ 23461975 (+)
gramd2b gramd3 coding downstream 764357 24472206 ~ 24482883 (+)
trnam-cau_40 NA coding downstream 794025 24501874 ~ 24501945 (+)
phax phax coding downstream 797788 24505637 ~ 24509580 (+)
lmnb1 lmnb1 coding downstream 816964 24524813 ~ 24542250 (+)
LOC103034699 NA coding downstream 883124 24590973 ~ 24596595 (+)
G178634 NA non-coding upstream 184773 23516311 ~ 23519214 (+)
G178635 NA non-coding upstream 188086 23515575 ~ 23515901 (+)
G178632 NA non-coding upstream 203646 23499843 ~ 23500341 (+)
G178611 NA non-coding upstream 228782 23447089 ~ 23475205 (+)
G178624 wrn,LOC107715857,LOC107573262 non-coding upstream 271276 23427385 ~ 23432711 (+)
G178781 NA non-coding downstream 480137 24187986 ~ 24191257 (+)
G178805 NA non-coding downstream 584126 24291975 ~ 24293344 (+)
LOC111195075 NA non-coding downstream 590263 24298112 ~ 24301847 (+)
G178844 NA non-coding downstream 804739 24512588 ~ 24513208 (+)
G178853 NA non-coding downstream 878658 24586507 ~ 24587635 (+)
G178485 NA other upstream 738998 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 994430 22689001 ~ 22709557 (+)
G178352 NA other upstream 1157857 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 1201828 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 1212484 22486823 ~ 22491503 (+)
LOC103032894 LOC108424565 other downstream 739943 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 1536312 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 3122788 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 3205901 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3816453 27524302 ~ 27525441 (+)

Expression


Co-expression Network