LOC111195084


Basic Information

Item Value
gene id LOC111195084
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29303039 ~ 29305397 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651483.1
ATGTAGTTAACCAGCATAGGGTGGGTATGTTTTTACCTGGATGATCTTTTCAAGCCTAAGGACCATCTGAAACCTGTTTCCTAGCCAGtatcTTACACTGAGTAAAAGGAATACCGTGCAGTACTGTAGCCAGTGAAAGGTACAGCCAGGATGTGCAACTTCATCAACCCAGCTCTTTTCTTTCTTGCTGAGATAATGATAGCAAAGCAACGTTCAAGAACAGCAGAGAATACGTCCTCATTAGCTAGCGCTGATTAGCTGTCAacacaaggagagagagaaagggagatagAGATGACCCTCTACTTTGCAGGTCACTGCAATTCAGGGGCGCAGAGGGCGATAACCAACAGATGATAAGCATACAGAGAGTCTTCTCACAGCCGTACCTCACAGCTCCCCGCTGTCccttctcacacactctcacactaacacacacatctgCAGCAGTGTGCAGTTCTCTCTACGAGAAACACTTCACTATCTGGCACTGTAAGGATGTGAGGCAGTATAGTGTGCACTCAAAACAATGTATGTAAACATTAATTGACATATCTGTGCTTTACACAAATGCATTATTTTGTAGCCAATGTTGTCAGGTTAGACAAGCTTTATAGAATGCCTCAAAGATGTATTCAATGCATGTGAGCAAAAACACAGCATGTGTTGCCATTGCATTATTATGTCATTCTTAAGTTGTTGTTAGAtatatattattctttattttatattattttatgcctgaTATTCACTGGGTAATCTGTTCCAACTACAGATTGTTCAATTTGATTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651483.1 True 795 lncRNA 0.41 3 29303039 29305397

Neighbor

gene id symbol gene type direction distance location
robo4 robo4 coding upstream 154229 29108308 ~ 29148810 (+)
tmem218 tmem218 coding upstream 204247 29090621 ~ 29098792 (+)
LOC103040165 LOC108423783,LOC108277314,LOC107746996 coding upstream 917944 27672949 ~ 28385095 (+)
c20h11orf63 NA coding upstream 1679374 27567728 ~ 27623665 (+)
LOC103043364 LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532 coding upstream 1736463 27561863 ~ 27566576 (+)
msantd2 msantd2,LOC107577222,LOC107588693 coding downstream 110426 29415823 ~ 29421907 (+)
esam NA coding downstream 123494 29428891 ~ 29503168 (+)
LOC103034698 v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding downstream 204701 29510098 ~ 29516946 (+)
fez1 fez1,LOC107691643,LOC107751387 coding downstream 222917 29528314 ~ 29557162 (+)
ccdc83 NA coding downstream 257147 29562544 ~ 29573245 (+)
G179872 NA non-coding upstream 1702 29300587 ~ 29301337 (+)
G179820 NA non-coding upstream 369899 28915333 ~ 28933140 (+)
G179819 NA non-coding upstream 390586 28912175 ~ 28912453 (+)
G179776 NA non-coding upstream 498332 28733121 ~ 28804707 (+)
G179745 NA non-coding upstream 674040 28628764 ~ 28628999 (+)
G179901 NA non-coding downstream 200156 29505553 ~ 29505977 (+)
LOC111195086 NA non-coding downstream 323094 29628491 ~ 29640752 (+)
G179985 NA non-coding downstream 448834 29754231 ~ 29754625 (+)
G179989 NA non-coding downstream 490324 29795721 ~ 29796232 (+)
G179992 NA non-coding downstream 517530 29822927 ~ 29823261 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 1777598 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 2386695 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 2423956 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 4045570 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 4848417 24447792 ~ 24454622 (+)
G180235 erg other downstream 1833947 31139344 ~ 31151095 (+)
G180266 NA other downstream 2127801 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 2959601 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 3744845 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 4867527 34172924 ~ 34328970 (+)

Expression


Co-expression Network