LOC111195086


Basic Information

Item Value
gene id LOC111195086
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29628491 ~ 29640752 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651484.1
CCGCTGCCACACTCCGCCATGTTGGCTCAAACTCGCAGTGAAGGACCGTCAGGCCCGCTGGAGCTCCGGCCGCTCAGAGCCAATATGGCGCCTCCTCCTCCGCAGCTGCTCGGCTTTATCTCGCTAACTAGCAGTTCGGCTGCACGAGCTGAGCAGCCCACGTGACCAGCATCACCCTGCCTGCCTGCCGCTACTTTCAGACTGCAGCCCAGTATCCACCAATACTTAAGggTTTCTGAACCTGTTGACCTCTGACCTCCACCACTAGGCCCTGAAGCACCCTCTGTTGGTCCACAGGCCCATTCTCAGCCTGTAGTTAACTGACTGCACTGTCCTGCTGAATGCCATGCCAACCAAACAGACATCCATGCTGGGAATTTCCTCACAGCCACTGACACCAGCTCGCCTGCTGACCCATGACATTTTCCTGAACAATGGCCCTGACAAAGACCATAATTACATGTACCCTGTTTAAGAAAGAGACACGTTTATCCACAGAGCCACGTAGCCAGACCAGATTCACCTCAGATACGTGAAAAAATGGCTTGCATAAGTATTTTTACCCTTTAACTAtgttgtcaccttacaaccacaaacctaaatgtgttttttat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651484.1 True 614 lncRNA 0.52 3 29628491 29640752

Neighbor

gene id symbol gene type direction distance location
ccdc83 NA coding upstream 55246 29562544 ~ 29573245 (+)
fez1 fez1,LOC107691643,LOC107751387 coding upstream 71329 29528314 ~ 29557162 (+)
LOC103034698 v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding upstream 111545 29510098 ~ 29516946 (+)
esam NA coding upstream 125323 29428891 ~ 29503168 (+)
msantd2 msantd2,LOC107577222,LOC107588693 coding upstream 206584 29415823 ~ 29421907 (+)
LOC103038052 zpld1,zpld1a,LOC103038052,LOC108276676,LOC107548885,LOC107693966 coding downstream 5940 29646692 ~ 29669237 (+)
LOC103038373 NA coding downstream 42478 29683230 ~ 29691495 (+)
LOC103038990 NA coding downstream 60610 29701362 ~ 29717879 (+)
alcam NA coding downstream 492442 30133194 ~ 30268718 (+)
bbx bbx coding downstream 863293 30504045 ~ 30560931 (+)
G179901 NA non-coding upstream 122514 29505553 ~ 29505977 (+)
LOC111195084 NA non-coding upstream 323094 29303039 ~ 29305397 (+)
G179872 NA non-coding upstream 327154 29300587 ~ 29301337 (+)
G179820 NA non-coding upstream 695351 28915333 ~ 28933140 (+)
G179819 NA non-coding upstream 716038 28912175 ~ 28912453 (+)
G179985 NA non-coding downstream 113479 29754231 ~ 29754625 (+)
G179989 NA non-coding downstream 154969 29795721 ~ 29796232 (+)
G179992 NA non-coding downstream 182175 29822927 ~ 29823261 (+)
G180022 NA non-coding downstream 486478 30127230 ~ 30127650 (+)
G180026 NA non-coding downstream 520480 30161232 ~ 30162112 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 2103050 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 2712147 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 2749408 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 4371022 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 5173869 24447792 ~ 24454622 (+)
G180235 erg other downstream 1498592 31139344 ~ 31151095 (+)
G180266 NA other downstream 1792446 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 2624246 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 3409490 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 4532172 34172924 ~ 34328970 (+)

Expression


Co-expression Network