LOC103046834


Basic Information

Item Value
gene id LOC103046834
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12576368 ~ 12581737 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_453678.3
tatatatatatataaatttaaaattaaattttaaacatttttggacAGTATATTCAAAGTTTATCTGAAAACTCTTCAAGTACTTACTTTTATTGTCCCTCACTGTAATAAGCGCATGAGCTCCATCATGAACAGATTATGGTTTCATCAATCGTTTTTTCCAAGACATTTAACATGTTCATCTACATTCTATAGTATATAGGCTGAGATTTGGGGTCAGAAACACAAAAGATCTCCATCTGTCTCTCAGTTAGTCCATCATGTGTTAATTTTGTCCAAAGAGATCCTCAATTCCAGAGAATTTTCCAGATATACAGTGAAAATCCTTGTTTTATGCAGGAGGCATTTTTACGGTAGTCCTCAAGTCTAAGAAGcagtttctgatagctggtttgAGTTTTTTCCCAGTGTAATAGCTGAGTCGACCGGGTGCTGACTCACTATTGCTCACGTCCAGACTGCCACTTCTCCAGAACAAAGACTTGGTTCCAGACTTTGTTCTTGTGCGGAgaaatttttactcttttactctaCACATCTGTACACTAATCTCTCTCAAAAAGGTTTTGATCAAGGTAAAGTTAAGGTAGAGCTTGTGAACTGTGAGCGTCTTAATGTTCTTAGTGTCTTTAGATGGGTAATAAAATCATGTATAAATTATGAtgaagtaatgttttttttaaacatattttttcttgtttacttgtatCAGAGGTGTCTAAGACAGTATGATTGGTTAATAATTAGATGTTTCAGCCATTGACCACAGACATGCTTGTACTCCTCCAGTGTGTGAAATTTACTGTCTTTCTCAAAATGTAGAAATGAAAGTTCTAAGAAAACCACACGACACATGACGATAGGAGGTAAAACAAAGGGTTCGATGTGTCACATTAGACGATATGAATAGATGTTAACGTCACAGGAAGATGAACAAAGACTTATTGTCTAATTGTTTACCAAGCTTTATAGAGAATGTTACCTCaggtttttattactttttagaTTTGTTAAATTTTGTTGAATGCTAAACGACTGTGAGGGGCCATGCCATAccaattttgtgtgtgtgtgtgtggtgtttgtgtgagtgagagagagactgtgtgtgtgggggggcaTCGAGGAAGGGGGTGGGGGGCGGCTACTTGGTGGCTAAATCTCATAAAAGGGTTTTCCTAATATGGGCTGTCTCTTCAAAGACTCCTCCTCTGCCCTGTTAGTGGGTGGGACGTTGGACTCTCCTTCAGCCAGTGATGACACAGCTACGACTCACTTCCCCATTAATTGGCTGAAACCAGTTCTTACAGGAACCGCCAGTGATAAATGTGAGAGTTCTCAGAAATCATTCATTTCTTCCTTCTCCTGAGCCGAGGGACACTGCGGGCAGCGTGGATGCTTCTTTGTTTTAGCCTTGTACCTGAGGtcactcaatttttttttttttagttttttttcctttttctgctcttttttcaTAGAGTTTCTCTCTGTATTCATGAAGGGTTTAGCAGTGTTCTGCCtcatattctgtctctctctctctctctctctctgaaggaGACTCTTCTGCCCAGTAGTATTGATGAGTAGTAATTGTATGTACCCCCTCCTCCCTGTACAGGGTTGTTTCCCTGTTCGGCACCTCTTCAAGGAGTATCCTGAGGATGGGAGGCGCAGCAGCATCGTACCGGAGAAACCTCGCCGGCTgaaaaaaacactggcTCTTCTGGACCTCCGAGAACTGGATACATTAAGGGTTTGTTTTTTGTCTGCTTCATCATACACTACTACTACCTTAAACACATCCATCAGCAGAAATactctgaggacaatattaagTGAGGGAACTTGAGTGTAGATGCATGAATGTTGATTTGATTTACCTAGATGTCTTCGATGTTTCCACATATTTATGGGTTTTTATGCCCTTCATTTAGCATTTCTGACTCTTATCAGAAGCTAACTCGTATGTCTAGTATAGTCAATGCGGTAAGTAAGGTTGTGGAGCGATATCTTAGATTTAGTGGCAGTCTAGTGTAGTGTGACGTGTCAGGAAGTGAACATCAGCATATTTTAAAAGTCATTTGATCTCTAAGCAAGCCTTATTCATGCCTTAAGATACAACacatatgtgtgtttgtatactATATATGCCAGATTACTACATACAGCATTGTGAAATATTTATGCCTGGATTTATTAGATATGTAAGAGGAGCTTACCAggaatgtaatataatttaattttggaTTGTTTTAACTTACTTACTTGTGAGTACATTACAGACTTTTATGTCCTTCCAGTggtgtttttgtaaatgcagtttagcatattttttaaatcttgtttAGCATATAATGTGTCGACAAAGTACTCGCAGATCtaactgcacattttattaaagaTCTCAGGTAGAGGGTTTGGTGCATATTTGACTTTAATGGTCTGTGGTAGATTATATGcttaaactgtaattttttattgtgAGTTTAAAACAATCCCAGACTGTATACATACTCATAATGTTGCCTTTGTCTgaagtcatttttttgtttctagagGGAGAACGAGAGCAAATCAGTCAGACCAGAACTGTGTAACCAGATGCAACAATACACTGAATTAgattaaggtgtgtgtgtgtgtgtgtttgcgcacATATGTGCGTGGGTGGTTGCTTGCTTGCTTGCCATTAGTGTGTAGTTCCATTTCTCACATATTCTTTACATCTTCAGTGAGGGTTTTCTCTGAAATACTTCCTGCCTAGAATAGTTTTCACTTACGCAGAACAGTCATATCTGACTGGGCCGTACTGCTAGTGCTGATGGGACTAGCTGATAGTATGTCAGTAACACAGAGAACAGTTTCTGCAGGTCTGTAGGTACTGTCAGTAGTGCAATTTATTTAGAAGTTTATAATCTAAGCACATTCCTTTTTTGTCATGTTTATTAACACAGGCCCACACTTAAAATAGGGTTGTGTCATTGTTTATTCATGCATTCTCTATAGTCAGTTTGTGACAAAACCTCATTGAtgggtttctttctttttttttttttcattttttaactgcttgtgaaatgttttttcccctcctctGTGCCTTTTTGTAACGCTGCCCTGGTATGCTACCCTGGACGCTTCAGGCGTATAAAAAATGGAACAGTGTGGAGTTTCTTTGCCGTTACCTTAACTGAACCCTGGATTGAACTCGATGCACTGTGCTGCTGGCAGCgaggatgagagagagggagcgagagggAGCGGAAGAGACAGGCGAAAGGCTAGACTGAGCTCAGCTagtgcccacacacacacacagctgaatgGGAATAGCATTTTTCTCTGGCATGAAGGGATTTAAATAAttcttatataaaataatgtacgGTTCCTTACCCTACCATACCACCAACACCCCTGTGCTTTCCTCTTTGTCTATGGTAagtgtttttcttctcttctttttgttcTATTTTGTGTGTGGTTCAGGCATTTCCATCCGTCTCTCCCAGTGTGTCAGATAGCTTATCAGACTGGTGTTGGCTGTTACATTGCATGGCGACAACAGTCTGTAGGCTGTCTGACATTTTGGGCTCTTTCATCTAAAATTGTGTCTTATAGTCTTAGTTTGTTGTTGCTGCCATTTTTTCATGACTTCTCCTGCTCTAATGGAAGAAAGGTCTATATGGAGAGAACAGTGTATGGATCTCTTACTCCTCTTTTACAACAGGTAGATTCCTAATGTAAAACAATCAAAAAACAAAGTGATTATCACCTTTGATTTCTACACCTCTGCTCAGAAATGTATTGCTTGCTTCCCAGAAGGAggctgtgtgtgcgtgcgtgcatcTTTGTGTGTACAGCGTGTATGTTTCTGGGGCTGGCCTAAATCTACTTACATTTCTTCAGAATCCAGAAAGAACACACCTTATTGCAACACACACTATTATGACACAGTTCTGTACTTCCCCCTCCTCTCTGGAACCATGCCTGTGTtgctcaacattttttttctctcagagTCTCAtgactgtgtttatttgttcatCCATTGTTTCTGCCCGCAATTTTTATTTGAGTCGAGTCATGGCTTGACCAATTAATGCTTATTCTGCCCCCGTTAAAATGCAGGGCCAAGCCGACTTACCTTTTGTAGGAtgacttgtttttttccacagaCTTATGATGAAGAGGCTTTTTTTGTGACTCTGGGACGTCTGGTTGGCTTGCAGACTCAGGGAGTATGTTTCCTTACTAGTGTTCTGAACATCCTGTTCTTAAGTGGATCTCTcctcttaaaaaaaatgctgttttctgtatgACATTTGTGtattatgtatttgtgtgtgcttatgtaaatgtaaaaaaaaagtgtaaatataatgtgtttccttgtatgtttatttatttttgtccaatAAATCACTCACATAGACCCCATTAACAAGTGA

Function

GO: NA

KEGG:

id description
ko04380 Osteoclast differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_453678.3 True 4457 lncRNA 0.39 2 12576368 12581737

Neighbor

gene id symbol gene type direction distance location
med13 med13,LOC107744626,LOC107699258,LOC107693951,LOC107747042,LOC107548827 coding downstream 107686 12337212 ~ 12468682 (-)
ints2 ints2,LOC107744627,LOC107699256,LOC107747027 coding downstream 269685 12256861 ~ 12306683 (-)
wdr74 wdr74 coding downstream 437579 12119986 ~ 12138789 (-)
LOC103046645 ehd1b,LOC108414013,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding downstream 495737 12008581 ~ 12080631 (-)
cxadr cxadr coding downstream 588454 11957424 ~ 11987914 (-)
LOC103039067 cltc coding upstream 111128 12692865 ~ 12753715 (-)
btg3 btg3,LOC102786047 coding upstream 176489 12758226 ~ 12761626 (-)
alox5ap alox5ap,LOC107697405,LOC107583340,LOC107743481,LOC102776613,LOC107579207,LOC107741175 coding upstream 182451 12764188 ~ 12768958 (-)
uspl1 NA coding upstream 196274 12778011 ~ 12788981 (-)
LOC103040161 NA coding upstream 426080 13007817 ~ 13011654 (-)
G175566 NA non-coding downstream 9361 12566716 ~ 12567007 (-)
G175476 NA non-coding downstream 16374 12518023 ~ 12559994 (-)
G175550 rnft1 non-coding downstream 50931 12524280 ~ 12525437 (-)
G175535 NA non-coding downstream 109910 12461377 ~ 12466458 (-)
LOC111195041 NA non-coding downstream 135507 12434739 ~ 12440861 (-)
G175573 NA non-coding upstream 2554 12584291 ~ 12585272 (-)
G175555 NA non-coding upstream 15910 12597647 ~ 12600254 (-)
G175553 NA non-coding upstream 19469 12601206 ~ 12605433 (-)
LOC103047042 NA non-coding upstream 24307 12606044 ~ 12645567 (-)
G175578 NA non-coding upstream 31418 12613155 ~ 12613413 (-)
G175119 NA other downstream 644614 11827807 ~ 11931754 (-)
G175072 NA other downstream 932736 11643317 ~ 11643632 (-)
LOC103024982 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017,LOC107678043,LOC107720692 other downstream 1116338 11442311 ~ 11460030 (-)
LOC103030477 NA other downstream 1172667 11397549 ~ 11403701 (-)
LOC103034963 fgf18,LOC103034963,LOC108437818,LOC108276546,LOC107588396,LOC107747128,LOC107660900 other downstream 1904887 10661604 ~ 10671481 (-)
G175583 NA other upstream 41474 12623211 ~ 12623555 (-)
G175647 NA other upstream 315303 12897040 ~ 12898630 (-)
G175707 NA other upstream 407200 12988937 ~ 12996934 (-)
LOC111195039 NA other upstream 421650 13003387 ~ 13007061 (-)
LOC103044870 NA other upstream 670420 13252157 ~ 13254568 (-)

Expression


Co-expression Network