trnam-cau_26


Basic Information

Item Value
gene id trnam-cau_26
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22531286 ~ 22531357 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnam-cau_26
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCtgcta

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_26 True 72 tRNA 0.60 1 22531286 22531357

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_29 NA coding downstream 96 22531118 ~ 22531190 (-)
trnam-cau_25 NA coding downstream 175 22531040 ~ 22531111 (-)
trnam-cau_24 NA coding downstream 391 22530824 ~ 22530895 (-)
trnam-cau_23 NA coding downstream 607 22530608 ~ 22530679 (-)
enoph1 enoph1,LOC107702573,LOC107715850,LOC102782295 coding downstream 46517 22478713 ~ 22484769 (-)
trnam-cau_27 NA coding upstream 145 22531502 ~ 22531573 (-)
trnar-ccu_30 NA coding upstream 223 22531580 ~ 22531652 (-)
trnam-cau_28 NA coding upstream 391 22531748 ~ 22531819 (-)
trnam-cau_29 NA coding upstream 607 22531964 ~ 22532035 (-)
trnam-cau_30 NA coding upstream 823 22532180 ~ 22532251 (-)
G178441 NA non-coding downstream 4375 22519464 ~ 22526911 (-)
G178440 NA non-coding downstream 7677 22515661 ~ 22523609 (-)
G178417 hnrnpd,LOC108440733,LOC108276832,LOC107702593 non-coding downstream 32039 22493456 ~ 22499247 (-)
G178416 hnrnpdl,LOC107715891,LOC107702595,LOC107653490 non-coding downstream 39781 22486845 ~ 22491505 (-)
G178427 NA non-coding downstream 69012 22460655 ~ 22462274 (-)
G178452 NA non-coding upstream 218156 22749513 ~ 22750079 (-)
G178505 NA non-coding upstream 338801 22870158 ~ 22880309 (-)
G178521 NA non-coding upstream 377435 22908792 ~ 22913269 (-)
G178528 NA non-coding upstream 398752 22930109 ~ 22930968 (-)
G178550 NA non-coding upstream 587351 23118708 ~ 23188801 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 21503 22501318 ~ 22509783 (-)
G178426 NA other downstream 74507 22455497 ~ 22456779 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 597455 21933519 ~ 21933831 (-)
G178173 NA other downstream 1235453 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 2791973 19738649 ~ 19739313 (-)
G178450 NA other upstream 140775 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 404133 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 413804 22945161 ~ 22957226 (-)
G178982 hint1,LOC107665476 other upstream 2599625 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 2671968 25203325 ~ 25207386 (-)

Expression


Co-expression Network