trnam-cau_38


Basic Information

Item Value
gene id trnam-cau_38
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22536184 ~ 22536255 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnam-cau_38
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_38 True 72 tRNA 0.60 1 22536184 22536255

Neighbor

gene id symbol gene type direction distance location
trnam-cau_37 NA coding downstream 685 22535428 ~ 22535499 (-)
trnam-cau_36 NA coding downstream 2464 22533649 ~ 22533720 (-)
trnam-cau_35 NA coding downstream 2883 22533230 ~ 22533301 (-)
trnar-ccu_32 NA coding downstream 3049 22533063 ~ 22533135 (-)
trnam-cau_34 NA coding downstream 3128 22532985 ~ 22533056 (-)
trnar-ccu_33 NA coding upstream 7 22536262 ~ 22536334 (-)
trnam-cau_39 NA coding upstream 173 22536428 ~ 22536499 (-)
LOC103044350 tpm2,LOC103044350,LOC108427282,LOC108276716,LOC107670037,LOC107737084,LOC105894628,LOC106571564,LOC107394912,LOC103389160,LOC108242564,LOC107572193,LOC107715874,LOC107102752,LOC102218310 coding upstream 5709 22541964 ~ 22578431 (-)
LOC103043437 tln1 coding upstream 45166 22581421 ~ 22671851 (-)
LOC103042817 hmgcs1,LOC108427280,LOC108277226,LOC107737058 coding upstream 142942 22679197 ~ 22693932 (-)
G178441 NA non-coding downstream 9273 22519464 ~ 22526911 (-)
G178440 NA non-coding downstream 12575 22515661 ~ 22523609 (-)
G178417 hnrnpd,LOC108440733,LOC108276832,LOC107702593 non-coding downstream 36937 22493456 ~ 22499247 (-)
G178416 hnrnpdl,LOC107715891,LOC107702595,LOC107653490 non-coding downstream 44679 22486845 ~ 22491505 (-)
G178427 NA non-coding downstream 73910 22460655 ~ 22462274 (-)
G178452 NA non-coding upstream 213258 22749513 ~ 22750079 (-)
G178505 NA non-coding upstream 333903 22870158 ~ 22880309 (-)
G178521 NA non-coding upstream 372537 22908792 ~ 22913269 (-)
G178528 NA non-coding upstream 393854 22930109 ~ 22930968 (-)
G178550 NA non-coding upstream 582453 23118708 ~ 23188801 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 26401 22501318 ~ 22509783 (-)
G178426 NA other downstream 79405 22455497 ~ 22456779 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 602353 21933519 ~ 21933831 (-)
G178173 NA other downstream 1240351 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 2796871 19738649 ~ 19739313 (-)
G178450 NA other upstream 135877 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 399235 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 408906 22945161 ~ 22957226 (-)
G178982 hint1,LOC107665476 other upstream 2594727 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 2667070 25203325 ~ 25207386 (-)

Expression


Co-expression Network