trnam-cau_39


Basic Information

Item Value
gene id trnam-cau_39
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22536428 ~ 22536499 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnam-cau_39
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_39 True 72 tRNA 0.60 1 22536428 22536499

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_33 NA coding downstream 94 22536262 ~ 22536334 (-)
trnam-cau_38 NA coding downstream 173 22536184 ~ 22536255 (-)
trnam-cau_37 NA coding downstream 929 22535428 ~ 22535499 (-)
trnam-cau_36 NA coding downstream 2708 22533649 ~ 22533720 (-)
trnam-cau_35 NA coding downstream 3127 22533230 ~ 22533301 (-)
LOC103044350 tpm2,LOC103044350,LOC108427282,LOC108276716,LOC107670037,LOC107737084,LOC105894628,LOC106571564,LOC107394912,LOC103389160,LOC108242564,LOC107572193,LOC107715874,LOC107102752,LOC102218310 coding upstream 5465 22541964 ~ 22578431 (-)
LOC103043437 tln1 coding upstream 44922 22581421 ~ 22671851 (-)
LOC103042817 hmgcs1,LOC108427280,LOC108277226,LOC107737058 coding upstream 142698 22679197 ~ 22693932 (-)
map3k1 map3k1,LOC107558252,LOC107670047 coding upstream 159810 22696309 ~ 22764412 (-)
LOC103040684 NA coding upstream 344625 22881124 ~ 22897545 (-)
G178441 NA non-coding downstream 9517 22519464 ~ 22526911 (-)
G178440 NA non-coding downstream 12819 22515661 ~ 22523609 (-)
G178417 hnrnpd,LOC108440733,LOC108276832,LOC107702593 non-coding downstream 37181 22493456 ~ 22499247 (-)
G178416 hnrnpdl,LOC107715891,LOC107702595,LOC107653490 non-coding downstream 44923 22486845 ~ 22491505 (-)
G178427 NA non-coding downstream 74154 22460655 ~ 22462274 (-)
G178452 NA non-coding upstream 213014 22749513 ~ 22750079 (-)
G178505 NA non-coding upstream 333659 22870158 ~ 22880309 (-)
G178521 NA non-coding upstream 372293 22908792 ~ 22913269 (-)
G178528 NA non-coding upstream 393610 22930109 ~ 22930968 (-)
G178550 NA non-coding upstream 582209 23118708 ~ 23188801 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 26645 22501318 ~ 22509783 (-)
G178426 NA other downstream 79649 22455497 ~ 22456779 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 602597 21933519 ~ 21933831 (-)
G178173 NA other downstream 1240595 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 2797115 19738649 ~ 19739313 (-)
G178450 NA other upstream 135633 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 398991 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 408662 22945161 ~ 22957226 (-)
G178982 hint1,LOC107665476 other upstream 2594483 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 2666826 25203325 ~ 25207386 (-)

Expression


Co-expression Network