trnam-cau_40


Basic Information

Item Value
gene id trnam-cau_40
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24501874 ~ 24501945 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnam-cau_40
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_40 True 72 tRNA 0.60 1 24501874 24501945

Neighbor

gene id symbol gene type direction distance location
gramd2b gramd3 coding upstream 18991 24472206 ~ 24482883 (+)
LOC111195073 NA coding upstream 794025 23703987 ~ 23707849 (+)
LOC103037096 LOC108410414,LOC108277158,LOC105901021,LOC106603263 coding upstream 811519 23541850 ~ 23690355 (+)
ppp2cb ppp2cb,LOC107758729 coding upstream 987163 23503307 ~ 23514711 (+)
LOC103034079 NA coding upstream 1004256 23494154 ~ 23497618 (+)
phax phax coding downstream 3692 24505637 ~ 24509580 (+)
lmnb1 lmnb1 coding downstream 22868 24524813 ~ 24542250 (+)
LOC103034699 NA coding downstream 89028 24590973 ~ 24596595 (+)
megf10 megf10,LOC107705845 coding downstream 101711 24603656 ~ 24676046 (+)
prrc1 prrc1,LOC107572184,LOC107705848,LOC107673757 coding downstream 182132 24684077 ~ 24699125 (+)
LOC111195075 NA non-coding upstream 200027 24298112 ~ 24301847 (+)
G178805 NA non-coding upstream 208530 24291975 ~ 24293344 (+)
G178781 NA non-coding upstream 310617 24187986 ~ 24191257 (+)
G178634 NA non-coding upstream 982660 23516311 ~ 23519214 (+)
G178635 NA non-coding upstream 985973 23515575 ~ 23515901 (+)
G178844 NA non-coding downstream 10643 24512588 ~ 24513208 (+)
G178853 NA non-coding downstream 84562 24586507 ~ 24587635 (+)
LOC111195077 NA non-coding downstream 96928 24598873 ~ 24599611 (+)
G178873 NA non-coding downstream 156462 24658407 ~ 24678663 (+)
G178896 NA non-coding downstream 293538 24795483 ~ 24817313 (+)
LOC103032894 LOC108424565 other upstream 47252 24447792 ~ 24454622 (+)
G178485 NA other upstream 1536885 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 1792317 22689001 ~ 22709557 (+)
G178352 NA other upstream 1955744 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 1999715 22493440 ~ 22502159 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 742216 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 2328692 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 2411805 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3022357 27524302 ~ 27525441 (+)
G180235 erg other downstream 6637399 31139344 ~ 31151095 (+)

Expression


Co-expression Network