G181777


Basic Information

Item Value
gene id G181777
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 163629 ~ 166044 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246176
CCGGGCAGTAAAGTCCACGGCAGCGCCACGGTTCAGCAGCAGTGTGGAAACGTTGACGTTCCCGTAGTGAGCAGCAATGTGAAGaggagtaaagccactctgatagaggaaaacaaaggaaagaaaggggaaaaaaagaagggacagtgaagaagaaaagaaagagagatttaGTTCCTGCGTATAGTCGGCAGGGGAAGCCATGCAGCATGCTAGTGAAGCATCGCAGCtgagaagaaattaaataattaaatgaaagagagagagagagagaaagaaagagagagagaactgacccaatacaaactgttaaaattagtGAAGCATGCAAAGACATGCTAATACtgataaataaactctttttccaTTATATGAGctcagatcacacacacacacacacacacacactcatatcagCAAAACCACGGAAAAAGgtaaagaaatagagaaaaagcaCTAAAGAACGAAacaacattagaaaaaaaaacagaacatgaaGATAAAGCAACTAATTAGTGCATCTAATAGCTAATCGCTAATCAGAGATGAGTGTTAATGTggatgtagtgtgtgtgtgtgtgtgagaaatggGGCCGTGCCTTACCTTCCCGCTCTGACAGACATGGTGCAATTCGAGAGACAAAATTAACAAAAGGGTGCAGCGGAAAAACTTAACTCAAAACTTCTACAAACACcgaccaatcagagagcagcgAGCAGACGGCATGCTATatccacacactcactgacttgtaacacagatatacacacattcATCAAGTATATAACACCAGTCTATAGCCATAGTATATGAATCCTGCACATATCCAAGAATAGAACCCCAGAACATAATTCTAGTATATAACCATAGTTTATAATCTCAGTATATAAACCTAATACatttacagctttggaaaaaattgagAGCGCACTTGAGTttctttatattcataaagagttcagaaatcaatatttggtggaataaccctgatggtttttaatcagagtttttttcatgcatcatggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctactttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcttcctcttgattatattccagcgtttttttagtttggtaaaatcaaagaaactcatcatttttaagtgctctcttattttttccccaaagctgtatatttacacataaaacataaaatctcGGTATATAAACCAAGTATAATTAAACTCAATATATAACACCAGCTTATAGCCCAGCACATAAATCCCATACATGACCCAAGTATAGAACCCCAATACATATACCTAGTACATAACCGTTGTTTATAATCTTAGTATATAACCACAGTATACTGCATAACTATGCTATATAATCCCAGTGTATAAACCCATCATATAATCCATAACATAAATCTAGTGTATAccctaatatatacatatattcacacataacataaaatataagcCTAGTATATAAACCCAGTATTTAAATCCAGTATAATgtccagtttaaaaaaaaaaaacaccagaattTAACTTCAGTATATGACCCCATTATATAACATCAGTGTATAAGCCCAGTATATAAATCATACCATCCCATTAAATAAACCCAGCATAGAACACAGGAATATAACTCCACTATATAACCCAACTATATAAACCTCATGATAAATACCCAGTACATAAACCCAGTGTATAATCCCGGTGTATGACCCAGGTATATAAACCCAGCATAAAACCTCAGTCTATAGCCTCAGAATATAAACCCAGCATATATAAATTCACTGTATAAATCCTGTATATAACACTGGTATATAACCCCACTTTACAATCccaatatttactgtatactgtatagaGTCATTAACAAACAAAGCTGTATCTAAAGTCTatcaaatgaaaaaacaatattatcagTAATAAAAACCATAACCCAGACAAAACCAGaagttttaccatttttagtGGCATGCAAGAGACTAATACATGCAGTgtttgctctgtgtgtgtgtgtgtgtgtgtgtgtttgctgtgtgtgtgtgtgtgttgtagagaAGACAGACAGAAGCATAAAGAAGACTGGCGGTCAGCTGAGAGAGTTTCAGTACCTCAGTGGTTCTGTTCACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246176 True 2196 lncRNA 0.36 3 163629 166044

Neighbor

gene id symbol gene type direction distance location
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding upstream 55739 65881 ~ 107890 (+)
LOC111195165 NA coding upstream 117976 40066 ~ 45653 (+)
LOC103026105 LOC103353182,LOC103469355,LOC103137796,LOC106954674,LOC102796940,LOC102236590 coding upstream 139663 12979 ~ 23966 (+)
LOC103027206 NA coding downstream 36264 202308 ~ 207014 (+)
LOC111195167 NA coding downstream 79422 245466 ~ 247320 (+)
LOC103031511 NA coding downstream 84432 250476 ~ 256183 (+)
LOC111195169 NA coding downstream 92847 258891 ~ 264780 (+)
LOC103032143 NA coding downstream 141633 307677 ~ 315123 (+)
LOC111195166 NA non-coding upstream 69860 93165 ~ 93769 (+)
G181750 NA non-coding upstream 134640 27415 ~ 28989 (+)
G181775 NA non-coding downstream 41702 207746 ~ 208523 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding downstream 45791 211835 ~ 231061 (+)
G181797 NA non-coding downstream 102658 268702 ~ 269257 (+)
G181798 NA non-coding downstream 105510 271554 ~ 273833 (+)
G181800 NA non-coding downstream 113521 279565 ~ 279790 (+)
G181779 cd027,LOC108413410 other downstream 25913 191957 ~ 199996 (+)
G181799 NA other downstream 110627 276671 ~ 278173 (+)
G181801 NA other downstream 116032 282076 ~ 286281 (+)
LOC111195149 NA other downstream 122966 289010 ~ 390166 (+)
LOC111195150 NA other downstream 134051 300095 ~ 306312 (+)

Expression


Co-expression Network