G181779 (cd027,LOC108413410)


Basic Information

Item Value
gene id G181779
gene name cd027,LOC108413410
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 191957 ~ 199996 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246178
gtcaaataaaaatatacactttattaaTTCTCTACTTCTGAACAACCTTATGAACACGTACCACAGAGTCGATAACATAACAGAACCACCTTAAACCATTAAGTCCAGTTCTCCATGAACAAAAACATCCTTGGTGGAGGAGGACTGAACTGGTCCAGAGTTTAGAACCGATCTACAGCAGCACACAGAGCTTCAGACGGAAGGAGACAGACCCAAATGAGGTTCTAGATCAAGCTGATGAATACGGGTCCAGATAACCGCAGCTTTGCACCATAGTATAAATCAGGATTAGAATAGAATTAGATGAGCAGGCATCAAATCTAGAAGAGTACCTGGATGGAGTGTGGACTGGAATTACTATTCTGATCTAGTTAAACAGGTTTGAGAAAAACAGTCTGGATTTGGATTCATACCATATACcagaactaaataaataaataaacacagagacaaaaTCTGGATTAATATTTGAAGTGACAAATCAGGATTAATATGTCCAATTATTTACTTGGATTATGTCCAAatatcactctctttttctgatCTGGATCACGTTAAGAAGCCAACACGTCCAGTCTGCTGTGAGCTCTGCGGAACTCTAAAGACCATTATGGTTCTAGACTCTGCTGAGTCAGCACGAGGAGGTTCTTTGGCtgctttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatactctgCATGCGCGTGAGTGTTTGTCGGTATCCACAGTAATGTCCATTAAAGCCCCTCTGATCTGCATTAGCTTCTTCGACTGTAATCTGAGCTCAGCACACACTTCCCCCGGCAACGTCCATCACATGAAGCTCCGCCCACGACCAGGAAGTCGCCGTGAGGCACAGCCTCTTAGGAGCCGGTCAGCTGATCCAGGTTGCCATGGGAACGGTTGGCGAGGTGAGCTTTAATTATTTCTCCGAACACACTCCGCTTTAGCAGGTCGTAGGCCATCGGCAGCAACTGACCAATGATCTTATGGAAGTaATGTGATCCGAAGCAGAAGAGGTCGATGCCGGCTTCGTAGCCCATTCCGTAATCGCACTCATCGTTAGCGAACTGCACAAACGTCATCATCTCCTGAATAGGAGCAAAGGCCGTCATCCTGGCTTTATCATCCACAGCTTCTGCGATATCCCTGCAGATCTTCTTCAGATCAgCATCACTATGGGGCAGTTCTCGGTATCCCACGTCATTTTTGTCTACCGGTACCACGATCCCCGCTCCGTGGAAGGTTTTAGTGACGACCTGTCTCTTGCTTTCATGGCTTTGGTTTTTTGCTCCAGCGGCAGCCCCAGACGCTCCGCTTCCTTCTTGAGTTTCACCTCCAATTGCTCCAGAGCTGCTTCGTCCTTCCGCACTCCACGCTCTCGCTTCTTACGGGCCAGAAACAAAAGCACAGCGGAGAAGAGATTGTCCCCCAGCTGGGTGATTTTGCAGCCCTTCTTCCCTTCATTCTCTCCGACAAACACTGGCACAGCATCAGGGCagtctCTGTAGTAGCCCATGTGGTGCTGAGTTTCAGCATCTCCCCGCAGGACTGTCTGAAGCTCCGGGGGGTCGTAGAAGAATCGCCAGTGCAGGTGGAAGTTGGGCTGGGCCGAGCCACAGTGCCGGTGCTTCTCAGCCAGGATATCAAACGGACCCACCAATCGCAGACCTAGAGCTTCCTGCAGAGCCTGCTGGATCGTCAGGGCTGATCTGTTTGCAGAAATTCCAGAACTGGTAGAAATCCTCTGGCATACGGAGTTTATACAGCCTCTCCACCTCCTCCCTCACCTGCAGCGGAACACCCGACCCTGTCTCCGCCCCCGACTCCACCTCCTCACCTCGCTTTCGCTTCACCTGCCCATTCACCTGCCCCACCTGTGGGGTAGTTTTGGCTTTCCTTTTCCCGCGTCCCGCCATTTTCTCCTTCTTCAGCACACGCAGCACGTCACTACGTAACCGCGCGTAACCTTTACGTCATCACGTCCATCTCCTCCC
>TU246179
gtcaaataaaaatatacactttattaaTTCTCTACTTCTGAACAACCTTATGAACACGTACCACAGAGTCGATAACATAACAGAACCACCTTAAACCATTAAGTCCAGTTCTCCATGAACAAAAACATCCTTGGTGGAGGAGGACTGAACTGGTCCAGAGTTTAGAACCGATCTACAGCAGCACACAGAGCTTCAGACGGAAGGAGACAGACCCAAATGAGGTTCTAGATCAAGCTGATGAATACGGGTCCAGATAACCGCAGCTTTGCACCATAGTATAAATCAGGATTAGAATAGAATTAGATGAGCAGGCATCAAATCTAGAAGAGTACCTGGATGGAGTGTGGACTGGAATTACTATTCTGATCTAGTTAAACAGGTTTGAGAAAAACAGTCTGGATTTGGATTCATACCATATACcagaactaaataaataaataaacacagagacaaaaTCTGGATTAATATTTGAAGTGACAAATCAGGATTAATATGTCCAATTATTTACTTGGATTATGTCCAAatatcactctctttttctgatCTGGATCACGTTAAGAAGCCAACACGTCCAGTCTGCTGTGAGCTCTGCGGAACTCTAAAGACCATTATGGTTCTAGACTCTGCTGAGTCAGCACGAGGAGGTTCTTTGGCtgctttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatactctgCATGCGCGTGAGTGTTTGTCGGTATCCACAGTAATGTCCATTAAAGCCCCTCTGATCTGCATTAGCTTCTTCGACTGTAATCTGAGCTCAGCACACACTTCCCCCGGCAACGTCCATCACATGAAGCTCCGCCCACGACCAGGAAGTCGCCGTGAGGCACAGCCTCTTAGGAGCCGGTCAGCTGATCCAGGTTGCCATGGGAACGGTTGGCGAGGTGAGCTTTAATTATTTCTCCGAACACACTCCGCTTTAGCAGGTCGTAGGCCATCGGCAGCAACTGACCAATGATCTTATGGAAGTaATGTGATCCGAAGCAGAAGAGGTCGATGCCGGCTTCGTAGCCCATTCCGTAATCGCACTCATCGTTAGCGAACTGCACAAACGTCATCATCTCCTGAATAGGAGCAAAGGCCGTCATCCTGGCTTTATCATCCACAGCTTCTGCGATATCCCTGCAGATCTTCTTCAGATCAgctacaaacacacagacacacacttctTTAGAAACATAGGAAACAAGAAGTTAAAGCAGAGATTCAAGTTGTCCACCAGAATGTAAcctctttttctgtttaaaaaaaaaaaaaaacacttatataaat

Function

NR:

description
PREDICTED: UPF0609 protein C4orf27 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246178 True 2003 TUCP 0.50 8 191957 199996
TU246179 False 1305 lncRNA 0.43 2 191957 194937

Neighbor

gene id symbol gene type direction distance location
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding upstream 84067 65881 ~ 107890 (+)
LOC111195165 NA coding upstream 146304 40066 ~ 45653 (+)
LOC103026105 LOC103353182,LOC103469355,LOC103137796,LOC106954674,LOC102796940,LOC102236590 coding upstream 167991 12979 ~ 23966 (+)
LOC103027206 NA coding downstream 2312 202308 ~ 207014 (+)
LOC111195167 NA coding downstream 45470 245466 ~ 247320 (+)
LOC103031511 NA coding downstream 50480 250476 ~ 256183 (+)
LOC111195169 NA coding downstream 58895 258891 ~ 264780 (+)
LOC103032143 NA coding downstream 107681 307677 ~ 315123 (+)
G181777 NA non-coding upstream 25913 163629 ~ 166044 (+)
LOC111195166 NA non-coding upstream 98188 93165 ~ 93769 (+)
G181750 NA non-coding upstream 162968 27415 ~ 28989 (+)
G181775 NA non-coding downstream 7750 207746 ~ 208523 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding downstream 11839 211835 ~ 231061 (+)
G181797 NA non-coding downstream 68706 268702 ~ 269257 (+)
G181798 NA non-coding downstream 71558 271554 ~ 273833 (+)
G181800 NA non-coding downstream 79569 279565 ~ 279790 (+)
G181799 NA other downstream 76675 276671 ~ 278173 (+)
G181801 NA other downstream 82080 282076 ~ 286281 (+)
LOC111195149 NA other downstream 89014 289010 ~ 390166 (+)
LOC111195150 NA other downstream 100099 300095 ~ 306312 (+)
G181818 NA other downstream 191618 391614 ~ 392130 (+)

Expression


Co-expression Network