G181782 (rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811)


Basic Information

Item Value
gene id G181782
gene name rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 211835 ~ 231061 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246184
GTCTCCTCTTCTGACTAAGCCAAAACCAAAAACCTTCTATTCTTGTTCTTCTATTCACCTGATGAACTCATTTGTAGTTTTGgcagtatgttttgggtcattatcttgctgcatgatgAAGGATCACCCAATACGTTTGGTTgcatctttgttttaatcagtatataaaaattttacttcactttactgcatcatgttttctttattccaacacaccatatataaatatataccataCTAAACTGAATGGCTAGAAGGCATTTACATGTGCACTGTTGTTCACTATACCAAACCCATTAACTCACTCACCACACCCAGAGCTAAACACTTACCACTCAGACACtccagaatgaggtagagtttGCCACCTGTCTGGAAGGCATACCACAAGTCCACGATGAAGGGATGACGAACGGTTTCCAAAATCTCTCGCTCCGCCCGAGTGTGCGCCGTGTCTTTAGCATTACGCACTATTTTTGCCTTTCTCAGAACTTTCATGGCAAATATTTTACCCATCTGACTTCCTTGCACTTTTCGAACCTGAAAGACcttgccATAGCCACCTTTCCCCAACACTGTGAGTAACTCAAAGCAGTCTGGTCCCACTCTCTCGCTGTCTCGGTTCACGACCTCACTGGTTAGCTCCACCTCCTCAGTCTCTAAAgGCTCCGATTCTGCCACTGTAAAGTTATAAACTTCATcctcTGGATCGCTTACGTCCTCCGACTCCAGGTCAATGTCGAACACCCCCGCCATCCTGCTGGGACCTTCATCCGCGTCACAGACCCGCTGCTGACTCAATACACTCAGTATAACCGCTCCACTTGGTAAACTGGGATGTGGCTGTATTAAAGGTGTATTAACGCTGTATTAAGGGTATATTAAAGGTGTATTAATCCCGTATTTAATGCGGCTGTCGGTGTTAAAGTGAAGGATCCTGATCAGCCCGCTCTGCCGCCCCAAACAAGAAGGGTAATGCTGCAGGCCGGAGCaccagtgggc
>TU246186
CTTTGCTTTACGGGCATTTTGTTAAGGGAGTTAACATATTTTAACTACCTCATTGTTTCAcaaagcagctattatttgggctGTATGCCATTTTCAGcactacagcagtgctgctggagtttttaaacactgtgtttaatcactcactgtcctccactctattacacactcctacctacagctgctccacctgGTAGATGTGGTCAGAGAGACAGATTAATAAAGCCTGTCgagaaacaaatacaaaactacaagtctgtaattatagaactacaaagttctCATATATGATCAGTGAGCTGAAAAGATGGACAATGTGTTTAGAAACAAGTAGGGAGGTCATAATATCATTAGTTATCTTTGACCACACATATTACAAGCTgccagcgctcagagggagcacaattggccctgctccctccgggtgggtacagtacagtagatggcgctctctccccacatcactcctagggtgatgtccgcagcacagggcgtctgtgagctgatgtatcagaaccgagtcgctgcgctttcctccaaactaACTTTTAACacatattattttagttttttttgcatgcatGGGTAATGTACCTGTATATCTGCACAGTCACCTTTACCAGAGCCCAGTCTTTGGGATGGGTTCTTCTTTAAAAGCTTTTTGATTAAGTCCCTAGCATCAGGTGTGAGGTAGGGGGGAAGGCAGATTTTACACTTAAGGATTTTATCGAtggtcttttttctgttttctcctgtaaatggaggCGAGCCGGTCATCATGTCAAACATCAGAGCTCCCAGACTCCACCAGTCCACTGCTCTGTTGTGTCCTGAACGGTTCAGAATCTCTGGAGCCATGTACTCGATGGTGCCGCAGAACGTGTGTGTGACGGTGCCGTCGTGGATGGATTCTTTGCACAGGCCGAAGTCTGTGAGCTTAATGTGGCcttCATGATTGAGCATGATGTTCTCTGGCTTCAGGTCTCTGTAGATGATCCCATTGGAGTGGAGGTGTCCCAGTGCTAACGTTATCTCAGCCAGATAAAAACAGGCCGTGTCTTCCATGAAGATTCCCTCCTTTTCCAGTTGCATAAACAGCTCGCCACCACTCAGACACtccagaatgaggtagagtttGCCACCTGTCTGGAAGGCATACCACAAGTCCACGATGAAGGGATGACGAACGGTTTCCAAAATCTCTCGCTCCGCCCGAGTGTGCGCCGTGTCTTTAGCATTACGCACTATTTTTGCCTTTCTCAGAACTTTCATGGCAAATATTTTACCCATCTGACTTCCTTGCACTTTTCGAACCTGAAAGACcttgccATAGCCACCTTTCCCCAACACTGTGAGTAACTCAAAGCAGTCTGGTCCCACTCTCTCGCTGTCTCGGTTCACGACCTCACTGGTTAGCTCCACCTCCTCAGTCTCTAAAgGCTCCGATTCTGCCACTGTAAAGTTATAAACTTCATcctcTGGATCGCTTACGTCCTCCGACTCCAGGTCAATGTCGAACACCCCCGCCATCCTGCTGGGACCTTCATCCGCGTCACAGACCCGCTGCTGACTCAATACACTCAGTATAACCGCTCCACTTGGTAAACTGGGATGTGGCTGTATTAAAGGTGTATTAACGCTGTATTAAGGGTATATTAAAGGTGTATTAATCCCGTATTTAATGCGGCTGTCGGTGTTAAAGTGAAGGATCCTGATCAGCCCGCTCTGCCGCCCCAAACAAGAAGGGTAATGCTGCAGGCCGGAGCaccagtgggc

Function

symbol description
rps6kb2 Predicted to enable ribosomal protein S6 kinase activity. Involved in TOR signaling and positive regulation of translational initiation. Predicted to be located in nucleoplasm. Predicted to be active in cytoplasm and nucleus.

NR:

description
PREDICTED: ribosomal protein S6 kinase beta-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246184 False 1002 lncRNA 0.45 6 220076 231061
TU246186 True 1776 lncRNA 0.47 12 211835 231061

Neighbor

gene id symbol gene type direction distance location
LOC103027206 NA coding upstream 4821 202308 ~ 207014 (+)
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding upstream 103945 65881 ~ 107890 (+)
LOC111195165 NA coding upstream 166182 40066 ~ 45653 (+)
LOC103026105 LOC103353182,LOC103469355,LOC103137796,LOC106954674,LOC102796940,LOC102236590 coding upstream 187869 12979 ~ 23966 (+)
LOC111195167 NA coding downstream 14405 245466 ~ 247320 (+)
LOC103031511 NA coding downstream 19415 250476 ~ 256183 (+)
LOC111195169 NA coding downstream 27830 258891 ~ 264780 (+)
LOC103032143 NA coding downstream 76616 307677 ~ 315123 (+)
LOC103032759 NA coding downstream 94575 325636 ~ 329837 (+)
G181775 NA non-coding upstream 3312 207746 ~ 208523 (+)
G181777 NA non-coding upstream 45791 163629 ~ 166044 (+)
LOC111195166 NA non-coding upstream 118066 93165 ~ 93769 (+)
G181750 NA non-coding upstream 182846 27415 ~ 28989 (+)
G181797 NA non-coding downstream 37641 268702 ~ 269257 (+)
G181798 NA non-coding downstream 40493 271554 ~ 273833 (+)
G181800 NA non-coding downstream 48504 279565 ~ 279790 (+)
G181802 NA non-coding downstream 51308 282369 ~ 282804 (+)
G181811 NA non-coding downstream 101519 332580 ~ 333245 (+)
G181779 cd027,LOC108413410 other upstream 11839 191957 ~ 199996 (+)
G181799 NA other downstream 45610 276671 ~ 278173 (+)
G181801 NA other downstream 51015 282076 ~ 286281 (+)
LOC111195149 NA other downstream 57949 289010 ~ 390166 (+)
LOC111195150 NA other downstream 69034 300095 ~ 306312 (+)
G181818 NA other downstream 160553 391614 ~ 392130 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_13342458_13361412 RPS6KB1A coding CI01000304 null 13342420 ~ 13361412 (-)
bowfin (Amia calva) AMCG00010872 si:ch211-195b13.1,LOC108273319,LOC108411161,LOC103036792,LOC107102671,LOC108251730,LOC103473069 coding CM030133.1 CM030133.1 3034347 ~ 3044090 (-)