G181797


Basic Information

Item Value
gene id G181797
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 268702 ~ 269257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246208
CGCTGGTCCAGAGGGAAAGTTTCCACCACCATTGGGTCCAAAGGGGAAATTTCCTCCTCCATTAGGTCCAAAGGGGAAATTTCCTCCACCGTTAGGTGCAAAGGGGAAATTTCCTCCTCCATTAGGTCCATTAGGAAACCTTCCTCCTCCGTTTGGCCCAAAGTTTCCCCCTCCATTTGGAGGACCGTTGGgctggaaataaaagaaaagattcAAAATTTGAGAAACAATTTCTTTACACTCATtaatatttaaagcagcactaggtaggatttccttgatttttgatctttttaaagaagtaaaattacagcttgaaactcactgcagcgctgcattgaggtgtaataggaggaatagcggtgctctcgtgtctgtgccggagctcctctgagctcaaaccagactctgtaagttttctgaggcggccgcgaccaacgctcgcgagaactgcgacctgctttccgacctttagttctaacagttctacaaggactactggttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246208 True 505 lncRNA 0.46 3 268702 269257

Neighbor

gene id symbol gene type direction distance location
LOC111195169 NA coding upstream 3922 258891 ~ 264780 (+)
LOC103031511 NA coding upstream 12519 250476 ~ 256183 (+)
LOC111195167 NA coding upstream 21382 245466 ~ 247320 (+)
LOC103027206 NA coding upstream 61688 202308 ~ 207014 (+)
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding upstream 160812 65881 ~ 107890 (+)
LOC103032143 NA coding downstream 38420 307677 ~ 315123 (+)
LOC103032759 NA coding downstream 56379 325636 ~ 329837 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding downstream 62873 332130 ~ 341442 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding downstream 108971 378228 ~ 426514 (+)
bdh2 bdh2,LOC107746975 coding downstream 194066 463323 ~ 475354 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding upstream 37641 211835 ~ 231061 (+)
G181775 NA non-coding upstream 60179 207746 ~ 208523 (+)
G181777 NA non-coding upstream 102658 163629 ~ 166044 (+)
LOC111195166 NA non-coding upstream 174933 93165 ~ 93769 (+)
G181750 NA non-coding upstream 239713 27415 ~ 28989 (+)
G181798 NA non-coding downstream 2297 271554 ~ 273833 (+)
G181800 NA non-coding downstream 10308 279565 ~ 279790 (+)
G181802 NA non-coding downstream 13112 282369 ~ 282804 (+)
G181811 NA non-coding downstream 63323 332580 ~ 333245 (+)
G181816 NA non-coding downstream 163282 432539 ~ 433567 (+)
G181779 cd027,LOC108413410 other upstream 68706 191957 ~ 199996 (+)
G181799 NA other downstream 7414 276671 ~ 278173 (+)
G181801 NA other downstream 12819 282076 ~ 286281 (+)
LOC111195149 NA other downstream 19753 289010 ~ 390166 (+)
LOC111195150 NA other downstream 30838 300095 ~ 306312 (+)
G181818 NA other downstream 122357 391614 ~ 392130 (+)

Expression


Co-expression Network