G181798


Basic Information

Item Value
gene id G181798
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 271554 ~ 273833 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246210
GGACTTCAGAGGCGCAGTGAAGTCGACCAGAACGaaTCGCGTCAGCAGTTCCACAAATATGAAGACAATAGTGAGCTTCATTTGCCTTCTTGGCTTTACTTTGACTTTGGTCGTCCAAgcCCAAATCGGGGACACGTCCTCCGTTTCTGAGTCTGATGAGATGTGGTCTCCTCCTCCGTTCCTGAGGCAGATGAGTCCGGACGAGctccgccagctcctgctgacTCTTCTCTCCGCCATTAATCCCAGTCCAGCTCCATCTACATCTACAGCTTCAGCACCCAGCACAACCCCTGCTCCTTCACCTCCTGGACGATAAACCACATAAACCCCCACCTCCGATTTATGCTGGAATGCTGGgatattaaaatcataattaaatgaattaaaacaaccatttttaaacaaatcacTCATGATGACTAAATGATGAACTAAATATCTACCCAAGATGTAAACTGAgtaatgtttcaataaaatgaaTGTGTAAAATGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246210 True 496 lncRNA 0.45 4 271554 273833

Neighbor

gene id symbol gene type direction distance location
LOC111195169 NA coding upstream 6774 258891 ~ 264780 (+)
LOC103031511 NA coding upstream 15371 250476 ~ 256183 (+)
LOC111195167 NA coding upstream 24234 245466 ~ 247320 (+)
LOC103027206 NA coding upstream 64540 202308 ~ 207014 (+)
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding upstream 163664 65881 ~ 107890 (+)
LOC103032143 NA coding downstream 33844 307677 ~ 315123 (+)
LOC103032759 NA coding downstream 51803 325636 ~ 329837 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding downstream 58297 332130 ~ 341442 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding downstream 104395 378228 ~ 426514 (+)
bdh2 bdh2,LOC107746975 coding downstream 189490 463323 ~ 475354 (+)
G181797 NA non-coding upstream 2297 268702 ~ 269257 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding upstream 40493 211835 ~ 231061 (+)
G181775 NA non-coding upstream 63031 207746 ~ 208523 (+)
G181777 NA non-coding upstream 105510 163629 ~ 166044 (+)
LOC111195166 NA non-coding upstream 177785 93165 ~ 93769 (+)
G181800 NA non-coding downstream 5732 279565 ~ 279790 (+)
G181802 NA non-coding downstream 8536 282369 ~ 282804 (+)
G181811 NA non-coding downstream 58747 332580 ~ 333245 (+)
G181816 NA non-coding downstream 158706 432539 ~ 433567 (+)
G181820 NA non-coding downstream 171248 445081 ~ 445298 (+)
G181779 cd027,LOC108413410 other upstream 71558 191957 ~ 199996 (+)
G181799 NA other downstream 2838 276671 ~ 278173 (+)
G181801 NA other downstream 8243 282076 ~ 286281 (+)
LOC111195149 NA other downstream 15177 289010 ~ 390166 (+)
LOC111195150 NA other downstream 26262 300095 ~ 306312 (+)
G181818 NA other downstream 117781 391614 ~ 392130 (+)

Expression


Co-expression Network