G181800


Basic Information

Item Value
gene id G181800
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 279565 ~ 279790 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246213
gagtttctttgattttaccaaattaaaaacctctggaatataaacaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaaattatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaaaaaactgtgattaaaaaccaccagggttattccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246213 True 226 lncRNA 0.37 1 279565 279790

Neighbor

gene id symbol gene type direction distance location
LOC111195169 NA coding upstream 14785 258891 ~ 264780 (+)
LOC103031511 NA coding upstream 23382 250476 ~ 256183 (+)
LOC111195167 NA coding upstream 32245 245466 ~ 247320 (+)
LOC103027206 NA coding upstream 72551 202308 ~ 207014 (+)
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding upstream 171675 65881 ~ 107890 (+)
LOC103032143 NA coding downstream 27887 307677 ~ 315123 (+)
LOC103032759 NA coding downstream 45846 325636 ~ 329837 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding downstream 52340 332130 ~ 341442 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding downstream 98438 378228 ~ 426514 (+)
bdh2 bdh2,LOC107746975 coding downstream 183533 463323 ~ 475354 (+)
G181798 NA non-coding upstream 5732 271554 ~ 273833 (+)
G181797 NA non-coding upstream 10308 268702 ~ 269257 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding upstream 48504 211835 ~ 231061 (+)
G181775 NA non-coding upstream 71042 207746 ~ 208523 (+)
G181777 NA non-coding upstream 113521 163629 ~ 166044 (+)
G181802 NA non-coding downstream 2579 282369 ~ 282804 (+)
G181811 NA non-coding downstream 52790 332580 ~ 333245 (+)
G181816 NA non-coding downstream 152749 432539 ~ 433567 (+)
G181820 NA non-coding downstream 165291 445081 ~ 445298 (+)
G181821 NA non-coding downstream 212808 492598 ~ 500981 (+)
G181799 NA other upstream 1392 276671 ~ 278173 (+)
G181779 cd027,LOC108413410 other upstream 79569 191957 ~ 199996 (+)
G181801 NA other downstream 2286 282076 ~ 286281 (+)
LOC111195149 NA other downstream 9220 289010 ~ 390166 (+)
LOC111195150 NA other downstream 20305 300095 ~ 306312 (+)
G181818 NA other downstream 111824 391614 ~ 392130 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 2177774 2457564 ~ 2460672 (+)

Expression


Co-expression Network