LOC111195149


Basic Information

Item Value
gene id LOC111195149
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 289010 ~ 390166 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246216
tatatataaatatatgactaaaaatgatcatatTGTCCTATACACTCAGTAGAGCTGAAGAACTGGATACCGGGTGTAGAAAGCAGGATGTTTGTTGGTGATTGGTGTGTATCCAGTGTCTTTAGTTGTGAGGTGGGGTGAGAATTGCAGCAGCGACAACTAATCCCCTCACATCTAATCcctctccagctccagctcagcttgTGAAATGACCattaatgacaaaaacacattaagcAATTCCCTCAAGGCTCATTAAGATTCGAGCTAAACCCACTGTTATTACCCTTATTACTCAGAATAATGCAATATCCTGCGGGTGAAGCCTTGTGAGGGTGgtgcacatgcaaaacagagaggaaagaaatgtattttcatttcattctcCTACAGAGATACAGAGCTTCTCTTACAACAGCTGAACAGGAGGTTCACGAGAGAAATGCATTATCCCAGAATGGCCAGTTCATTACTGCTGTCTGTCCTGTGTCTGACACTGCCTGCCACTGTTTCTCCTCATCATGGATATAAATTCTCTGCAAGCGACGAGaGGTTCTACTGGCCTCCGTATCCTGGGTTCCATCATTATCCAAGTGTCCCACCATCTTGGATTCCTTGGTTTACTGTGCTTTATCCTTTTAATCCTGCCCCCGCCCCGGCTCCTGCCCCGGCTCCTGCCCCGGCTCCTGCCACTACACCTGGTCCAGTGGTCACTCGTGGAGACGGCTAGAAGATACCATACAGTAGATCTGGATTTCacttataaaaacaattaatttaatagtttttacaGAAAAAGGAGCAGAAGTAATGGGATAGGATGATTTCTAATTATGAAAATCATGCTGTTTTGAAGCATCATGATTATCAGTATTGTAAAATTACATACACTAATGGTCAGATGTTTTACAACGCCCCAGACTACCAgtgctttaatatatatatagtgcccTGTATAGGCATGTCTAACAGTCAACCATCTCTCactaagaggtacactacccaaaaaagTCCTCTCTTAATCCAGACATTAGACACCATGAAGTTTATGctctttttgttttacaataccaaaatatttttctaattttattccaAATCATGTTAACATagtgttaaaaaatgtaattacacaaatatgcagtatatataagcaccaaaattaacattttggcCCAAATACAgaacctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcttctatctatctatctatctaatctatctatctatctatctatctatctatctatctatctatctatctatctacctacctacctacctacctacctacctacctacctacctacctacctacctacccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccgttttTAGGAAGCAAGTCATTTGTTAACAACTTACAGCTGGTCAAACAGAGCTCTGgaaatggatttttttaaatgaaaatgaaaatatatatatatatatttttttttatatatatttacaaatcaTCCCATCCTGTTACGCAGttacacactttttatttttgtatttaaatgccCCTGAACTGCactaaatgtatattttgatGAACACTATTACACAATTAcaattagtaataataaaataaaatattttttaaacacacacttacactcaagTCACTGTAAAATGACAATACTGTATGGTGGTACGtgccaaaacaaataaactttattttataagcAATGAA
>TU246219
tatatataaatatatgactaaaaatgatcatatTGTCCTATACACTCAGTAGAGCTGAAGAACTGGATACCGGGTGTAGAAAGCAGGATGTTTGTTGGTGATTGGTGTGTATCCAGTGTCTTTAGTTGTGAGGTGGGGTGAGAATTGCAGCAGCGACAACTAATCCCCTCACATCTAATCcctctccagctccagctcagcttgTGAAATGACCattaatgacaaaaacacattaagcAATTCCCTCAAGGCTCATTAAGATTCGAGCTAAACCCACTGTTATTACCCTTATTACTCAGAATAATGCAATATCCTGCGGGTGAAGCCTTGTGAGGGTGgtgcacatgcaaaacagagaggaaagaaatgtattttcatttcattctcCTACAGAGATACAGAGCTTCTCTTACAACAGCTGAACAGGAGGTTCACGAGAGAAATGCATTATCCCAGAATGGCCAGTTCATTACTGCTGTCTGTCCTGTGTCTGACACTGCCTGCCACTGTTTCTCCTCATCATGGATATAAATTCTCTGCAAGCGACGAGaGGTTCTACTGGCCTCCGTATCCTGGGTTCCATCATTATCCAAGTGTCCCACCATCTTGGATTCCTTGGTTTACTGTGCTTTATCCTTTTAATCCTGCCCCCGCCCCGGCTCCTGCCCCGGCTCCTGCCCCGGCTCCTGCCACTACACCTGGTCCAGTGGTCACTCGTGGAGACGGCTAGAAGATACCATACAGTAGATCTGGATTTCacttataaaaacaattaatttaatagtttttacaGAAAAAGGAGCAGAAGTAATGGGATAGGATGATTTCTAATTATGAAAATCATGCTGTTTTGAAGCATCATGATTATCAGTATTGTAAAATTACATACACTAATGGTCAGATGTTTTACAACGCCCCAGACTACCAgtgctttaatatatatatagtgcccTGTATAGGCATGTCTAACAGTCAACCATCTCTCactaagaggtacactacccaaaaaagTCCTCTCTTAATCCAGACATTAGACACCATGAAGTTTATGctctttttgttttacaataccaaaatatttttctaattttattccaAATCATGTTAACATagtgttaaaaaatgtaattacacaaatatgcagtatatataagcaccaaaattaacattttggcCCAAATACAgaacctatacatccatccatccatcc
>XM_022681573.1
CTTGTGAGGGTGgtgcacatgcaaaacagagaggaaagaaatgtattttcatttcattctcCTACAGAGATACAGAGCTTCTCTTACAACAGCTGAACAGGAGGTTCACGAGAGAAATGCATTATCCCAGAATGGCCAGTTCATTACTGCTGTCTGTCCTGTGTCTGACACTGCCTGCCACTGTTTCTCCTCATCATGGATATAAATTCTCTGCAAGCGACGAGaGGTTCTACTGGCCTCCGTATCCTGGGTTCCATCATTATCCAAGTGTCCCACCATCTTGGATTCCTTGGTTTACTGTGCTTTATCCTTTTAATCCTGCCCCCGCCCCGGCTCCTGCCCCGGCTCCTGCCCCGGCTCCTGCCACTACACCTGGTCCAGTGGTCACTCGTGGAGACGGCTAGAAGATACCATACAGTAGATCTGGATTTCacttataaaaacaattaatttaatagtttttacaGAAAAAGGAGCAGAAGTAATGGGATAGGATGATTTCTAATTATGAAAATCATGCTGTTTTGAAGCATCATGATTATCAGTATTGTAAAATTACATACACTAATGGTCAGATGTTTTACAACGCCCCAGACTACCAgtgctttaatatatatatagtgcccTGTATAGGCATGTCTAACAGTCAACCATCTCTCactaagaggtacactacccaaaaaagTCCTCTCTTAATCCAGACATTAGACACCATGAAGTTTATGctctttttgttttacaataccaaaatatttttctaattttattccaAATCATGTTAACATagtgttaaaaaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246216 True 1834 lncRNA 0.37 4 289010 292251
TU246219 False 1210 lncRNA 0.40 5 289010 390166
XM_022681573.1 False 799 mRNA 0.41 4 289336 291542

Neighbor

gene id symbol gene type direction distance location
LOC111195169 NA coding upstream 24230 258891 ~ 264780 (+)
LOC103031511 NA coding upstream 32827 250476 ~ 256183 (+)
LOC111195167 NA coding upstream 41690 245466 ~ 247320 (+)
LOC103027206 NA coding upstream 81996 202308 ~ 207014 (+)
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding upstream 181120 65881 ~ 107890 (+)
bdh2 bdh2,LOC107746975 coding downstream 73157 463323 ~ 475354 (+)
LOC103047018 LOC108434388 coding downstream 85505 475671 ~ 495422 (+)
suclg1 suclg1 coding downstream 119485 509651 ~ 540134 (+)
lrrtm1 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618 coding downstream 757932 1148098 ~ 1153043 (+)
LOC103025599 NA coding downstream 1001245 1391411 ~ 1412738 (+)
G181802 NA non-coding upstream 6206 282369 ~ 282804 (+)
G181800 NA non-coding upstream 9220 279565 ~ 279790 (+)
G181798 NA non-coding upstream 15177 271554 ~ 273833 (+)
G181797 NA non-coding upstream 19753 268702 ~ 269257 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding upstream 57949 211835 ~ 231061 (+)
G181816 NA non-coding downstream 42373 432539 ~ 433567 (+)
G181820 NA non-coding downstream 54915 445081 ~ 445298 (+)
G181821 NA non-coding downstream 102432 492598 ~ 500981 (+)
G181927 NA non-coding downstream 239741 629907 ~ 663519 (+)
G181934 NA non-coding downstream 285753 675919 ~ 676207 (+)
G181801 NA other upstream 2729 282076 ~ 286281 (+)
G181799 NA other upstream 10837 276671 ~ 278173 (+)
G181779 cd027,LOC108413410 other upstream 89014 191957 ~ 199996 (+)
G181818 NA other downstream 1448 391614 ~ 392130 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 2067398 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 2135517 2525683 ~ 2569294 (+)
G182356 NA other downstream 2866201 3256367 ~ 3258850 (+)
G182361 NA other downstream 2897772 3287938 ~ 3290258 (+)

Expression


Co-expression Network