LOC111195150


Basic Information

Item Value
gene id LOC111195150
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 300095 ~ 306312 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246223
GATCTCCCATAGCATGAGCACTGAACTTCATCAACACCGCCACTTCATCTATACACTCCAGCGTCAAATACAGACACTTCTTCAGATTCATCATGAAATCCCTCGTTTTGTTGGCATGTGTCATTGGAGTGGCCCTCTGCGCTCCGCAAATGCTGTACTACGAGTTGGAGTACAAGCCCGTCCGTGTGGCTCCACAGGCTCTTGCTGCCCCGGGTGCCCCgGCTGCCCCAGCCGCACCTGCTGTCCCAGTTGCCCCTGTAGCTCCTGTTGCCCGGGCCCCTCTTCCCAggagtgatgatgatgatgagaacGATGACTAAAAACAGacaatCTGATGAGAAGCTGACTACTACACTTAAAagctaaagacaaaaaaagctgCTTTTAATGTTTTAGTCATTAAATTTTAAGTAAGTTTTAGGCATTAAATTTGCATATGGATGAGCAGATAAAAGTTTCTTTGCCTGGatgcattaaaagaaaaaaaaaaacgttaaaattgGTTAagctttgtttctgttttttaattttttgttgttttgtaccGCATTAATGAtttgagtttaaataaaaaaataaactgta
>XM_022681574.1
CTACGGGCCAATATAAAGCAGCAGATCTCCCATAGCATGAGCACTGAACTTCATCAACACCGCCACTTCATCTATACACTCCAGCGTCAAATACAGACACTTCTTCAGATTCATCATGAAATCCCTCGTTTTGTTGGCATGTGTCATTGGAGTGGCCCTCTGCGCTCCGCAAATGCTGTACTACGAGTTGGAGTACAAGCCCGTCCGTGTGGCTCCACAGGCTCTTGCTGCCCCGGGTGCCCCggtcgctgctgctgctgccgtgCCCTCTGAGGTGGAGATCCTCCTGGCTCAGCAGGCAGCTGCAGCTCACgCCCTTCCTGCTCGTGGCTTCATCAAACACGAGATTCCCCAGCCTGCAGGCAGAGATAGCATTGAAGTTCTCTACCCATTCGGCTTTGCTCCCGCTGCCCCAGCCGCACCTGCTGTCCCAGTTGCCCCTGTAGCTCCTGTTGCCCGGGCCCCTCTTCCCAggagtgatgatgatgatgagaacGATGACTAAAAACAGacaatCTGATGAGAAGCTGACTACTACACTTAAAagctaaaga

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246223 True 585 lncRNA 0.42 7 300118 306312
XM_022681574.1 False 554 mRNA 0.55 9 300095 306096

Neighbor

gene id symbol gene type direction distance location
LOC111195169 NA coding upstream 35315 258891 ~ 264780 (+)
LOC103031511 NA coding upstream 43912 250476 ~ 256183 (+)
LOC111195167 NA coding upstream 52775 245466 ~ 247320 (+)
LOC103027206 NA coding upstream 93081 202308 ~ 207014 (+)
LOC103030568 camk2d2,LOC107714220,LOC107742503,LOC107563926 coding upstream 192205 65881 ~ 107890 (+)
LOC103032143 NA coding downstream 1365 307677 ~ 315123 (+)
LOC103032759 NA coding downstream 19324 325636 ~ 329837 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding downstream 25818 332130 ~ 341442 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding downstream 71916 378228 ~ 426514 (+)
bdh2 bdh2,LOC107746975 coding downstream 157011 463323 ~ 475354 (+)
G181802 NA non-coding upstream 17291 282369 ~ 282804 (+)
G181800 NA non-coding upstream 20305 279565 ~ 279790 (+)
G181798 NA non-coding upstream 26262 271554 ~ 273833 (+)
G181797 NA non-coding upstream 30838 268702 ~ 269257 (+)
G181782 rps6kb2,LOC108413157,LOC108260512,LOC103368287,LOC104930044,LOC101478146,LOC102204811 non-coding upstream 69034 211835 ~ 231061 (+)
G181811 NA non-coding downstream 26268 332580 ~ 333245 (+)
G181816 NA non-coding downstream 126227 432539 ~ 433567 (+)
G181820 NA non-coding downstream 138769 445081 ~ 445298 (+)
G181821 NA non-coding downstream 186286 492598 ~ 500981 (+)
G181927 NA non-coding downstream 323595 629907 ~ 663519 (+)
G181801 NA other upstream 13814 282076 ~ 286281 (+)
G181799 NA other upstream 21922 276671 ~ 278173 (+)
G181779 cd027,LOC108413410 other upstream 100099 191957 ~ 199996 (+)
G181818 NA other downstream 85302 391614 ~ 392130 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 2151252 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 2219371 2525683 ~ 2569294 (+)
G182356 NA other downstream 2950055 3256367 ~ 3258850 (+)
G182361 NA other downstream 2981626 3287938 ~ 3290258 (+)

Expression


Co-expression Network