G181816


Basic Information

Item Value
gene id G181816
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 432539 ~ 433567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246234
CATTTCTAAATGGGTGCATAACGACTACAGTAGATTAGAATATAACAGCCTAAATAAAGGTatagagccagaaggtaacatagacatgagagCACCTTAAATACTGGTGCCCATTCACACCACAATCAACAAACCCGATTGAACAGAACCAGGATATCAGTTTATCATAATTTCCTGATGTCTTACAACAAAACACCCAGAATTCTGCAGCCTTTATATTTAAGGGGAAACCAAATTCAAtaccaaaagctaaaaaaacaagcagGTTTTCAGCTTTGTGAAAACTGGTCTCAAACAATATTTGTAAGGTTATTAAAGAGTAGAGTGGCCTTTATAAAGAGagtttatccatccatccatctgacTTCCACCAAATCTTAACTACTGCTGCCTATTTTCTGTATTactctattttcttttcttaaaaagATGAAGAAATGTGACAAATCTTACAAATATTgttgattaaaaattaaaatttgtaAGAAAGAATACATATATTCTGGTGGGCACCCACTATTATCGAGTATCTATTATAAGGTAGTTTTCAGTGAGTagttcttcttttcttttacataaCAAAAGCAAATATTGAATTTCTGTCCATGATAaagcagatacagatacagtgcatatacataatataaaaaaataccagaGCATTTCTTTGATTTGTGAGTTGATGTGTGCTTTTGCAATTTCACCGTGAATTCAAACAATTAAAAACGTTTTGTGGCATGCAGGCGATTGTGTCTTAGTTCTGTCGTGTCTTTTTTAAAGGGCATCACCTGCCCTGTAATTGTGTAGGTCAGTAAAATTTGTGTATtctgactcttttttttaaggtcacttttttttaacaaaaaggtCTTTGTTGGAGCATACTAATTGTTGGTTAAATTTCGTTTACGCTTTTTTTTATGCAGATATGCTATTTGACATCATGTTGGCCTGTAAGATGTTTAATCCCCagaatttaagattttttattcagttattaatccTAATAAAGGAACATGAATGCACTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246234 True 1029 lncRNA 0.33 1 432539 433567

Neighbor

gene id symbol gene type direction distance location
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding upstream 6025 378228 ~ 426514 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding upstream 91097 332130 ~ 341442 (+)
LOC103032759 NA coding upstream 102702 325636 ~ 329837 (+)
LOC103032143 NA coding upstream 117416 307677 ~ 315123 (+)
LOC111195169 NA coding upstream 167759 258891 ~ 264780 (+)
bdh2 bdh2,LOC107746975 coding downstream 29756 463323 ~ 475354 (+)
LOC103047018 LOC108434388 coding downstream 42104 475671 ~ 495422 (+)
suclg1 suclg1 coding downstream 76084 509651 ~ 540134 (+)
lrrtm1 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618 coding downstream 714531 1148098 ~ 1153043 (+)
LOC103025599 NA coding downstream 957844 1391411 ~ 1412738 (+)
G181811 NA non-coding upstream 99294 332580 ~ 333245 (+)
G181802 NA non-coding upstream 149735 282369 ~ 282804 (+)
G181800 NA non-coding upstream 152749 279565 ~ 279790 (+)
G181798 NA non-coding upstream 158706 271554 ~ 273833 (+)
G181797 NA non-coding upstream 163282 268702 ~ 269257 (+)
G181820 NA non-coding downstream 11514 445081 ~ 445298 (+)
G181821 NA non-coding downstream 59031 492598 ~ 500981 (+)
G181927 NA non-coding downstream 196340 629907 ~ 663519 (+)
G181934 NA non-coding downstream 242352 675919 ~ 676207 (+)
LOC111195161 NA non-coding downstream 291514 725081 ~ 739466 (+)
G181818 NA other upstream 40409 391614 ~ 392130 (+)
LOC111195149 NA other upstream 42373 289010 ~ 390166 (+)
LOC111195150 NA other upstream 126227 300095 ~ 306312 (+)
G181801 NA other upstream 146258 282076 ~ 286281 (+)
G181799 NA other upstream 154366 276671 ~ 278173 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 2023997 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 2092116 2525683 ~ 2569294 (+)
G182356 NA other downstream 2822800 3256367 ~ 3258850 (+)
G182361 NA other downstream 2854371 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 3936350 4369917 ~ 4431946 (+)

Expression


Co-expression Network