G181821



Basic Information


Item Value
gene id G181821
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 492598 ~ 500981 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU246239
AACGCCAGGTATGAACGGGCTCAGACTCACACTGCCAGTGTAGTATGGTATTTGGTTTatctcagagactgtaaaaaagatggacgctgtgtctccgttcccattcattcaaagaaaatgaagccaaaatcttcctccatgttggcgatcctgaaacccgagtctgtagagcgcagtagagaccagaggagggagaaagactgtggagagaccgcctactcatttaaataaccccgcccctgagggctgcctcgaggtcacaggctgcagaacagagcggggcggagcggagctgacggtctgttattggtcccgcccataaccagcccttttacaataaccacaccttttttgaatagagctgaataacgttttaaaaaacgaattctgtgggg

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU246239 True 395 lncRNA 0.49 2 492598 500981

Neighbor


gene id symbol gene type direction distance location
bdh2 bdh2,LOC107746975 coding upstream 17244 463323 ~ 475354 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding upstream 66084 378228 ~ 426514 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding upstream 151156 332130 ~ 341442 (+)
LOC103032759 NA coding upstream 162761 325636 ~ 329837 (+)
LOC103032143 NA coding upstream 177475 307677 ~ 315123 (+)
suclg1 suclg1 coding downstream 8670 509651 ~ 540134 (+)
lrrtm1 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618 coding downstream 647117 1148098 ~ 1153043 (+)
LOC103025599 NA coding downstream 890430 1391411 ~ 1412738 (+)
uchl1 uchl1,LOC107548360,LOC107709457 coding downstream 940469 1441450 ~ 1446518 (+)
LOC103024236 NA coding downstream 946721 1447702 ~ 1517348 (+)
G181820 NA non-coding upstream 47300 445081 ~ 445298 (+)
G181816 NA non-coding upstream 59031 432539 ~ 433567 (+)
G181811 NA non-coding upstream 159353 332580 ~ 333245 (+)
G181802 NA non-coding upstream 209794 282369 ~ 282804 (+)
G181800 NA non-coding upstream 212808 279565 ~ 279790 (+)
G181927 NA non-coding downstream 128926 629907 ~ 663519 (+)
G181934 NA non-coding downstream 174938 675919 ~ 676207 (+)
LOC111195161 NA non-coding downstream 224100 725081 ~ 739466 (+)
LOC103046702 NA non-coding downstream 414278 915259 ~ 993969 (+)
G181955 NA non-coding downstream 417349 918330 ~ 924178 (+)
G181818 NA other upstream 100468 391614 ~ 392130 (+)
LOC111195149 NA other upstream 102432 289010 ~ 390166 (+)
LOC111195150 NA other upstream 186286 300095 ~ 306312 (+)
G181801 NA other upstream 206317 282076 ~ 286281 (+)
G181799 NA other upstream 214425 276671 ~ 278173 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 1956583 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 2024702 2525683 ~ 2569294 (+)
G182356 NA other downstream 2755386 3256367 ~ 3258850 (+)
G182361 NA other downstream 2786957 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 3868936 4369917 ~ 4431946 (+)

Expression



Co-expression Network