G181890


Basic Information

Item Value
gene id G181890
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 410226 ~ 410543 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246318
ctctgaagagtggcatcatgggctcatcaaaacaactctcaaatgatctaaaaacaaagattgttcaacatagttgttcaggggaaggatacaaaaagttgtctcagagatttaacctgtcagtttccactgtgaggaacatagtaaggagatggaagagcacagggacagttcttgttaagcccagaagtggcaggccaagaaaaatatcagaaaggcagagaagaagaatggtgagaacagtcaaggacaatccacagaccacctccaaagagctgcagcatcatcttgctgcagatggtgtcactgtgcatcgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246318 True 318 lncRNA 0.44 1 410226 410543

Neighbor

gene id symbol gene type direction distance location
LOC111195168 NA coding downstream 139866 264960 ~ 270360 (-)
rps6kb2 rps6kb2,LOC108413157,LOC108260512,LOC103368287 coding downstream 179097 207651 ~ 231129 (-)
LOC103027497 LOC108413410 coding downstream 210247 191958 ~ 199979 (-)
LOC103030885 LOC107692594,LOC107702307 coding downstream 219485 109764 ~ 190741 (-)
LOC111195164 NA coding downstream 374713 28644 ~ 35513 (-)
ctnna2 ctnna2 coding upstream 542456 952999 ~ 1099800 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding upstream 968950 1379493 ~ 1390551 (-)
LOC103024763 LOC108434311,LOC108434344 coding upstream 1003526 1414069 ~ 1421243 (-)
LOC103025290 LOC108434344,LOC108434311 coding upstream 1012496 1423039 ~ 1438417 (-)
trnai-aau_12 NA coding upstream 1117483 1528026 ~ 1528099 (-)
G181888 NA non-coding downstream 15023 394976 ~ 395203 (-)
LOC111195159 NA non-coding downstream 86444 322631 ~ 323782 (-)
G181853 NA non-coding downstream 147470 220742 ~ 262756 (-)
G181858 NA non-coding downstream 168053 241686 ~ 242173 (-)
G181846 NA non-coding downstream 315637 92965 ~ 94589 (-)
G181891 NA non-coding upstream 2909 413452 ~ 413862 (-)
G181893 NA non-coding upstream 14894 425437 ~ 425995 (-)
G181894 LOC108411976 non-coding upstream 15519 426062 ~ 429534 (-)
G181895 NA non-coding upstream 19407 429950 ~ 430644 (-)
G181896 NA non-coding upstream 20646 431189 ~ 433139 (-)
LOC103026712 NA other downstream 361932 45736 ~ 48294 (-)
cisd2 cisd2 other upstream 83647 494190 ~ 508064 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 1174952 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 2984576 3395119 ~ 3454586 (-)
G182501 NA other upstream 3137090 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 4696493 5107036 ~ 5109098 (-)

Expression


Co-expression Network