G181893


Basic Information

Item Value
gene id G181893
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 425437 ~ 425995 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246321
ttaagttcatgtaatataatttttaagtacaatgaacttaacaaatacatatacatatatatttaaaattaatattttcctgaacttgtatttagtcttatttctggtttcattcaactatttttttaaatcctcatagaaaagtagatgaaagaaaacagtaaagaattaaaagtactgagagcacagcgagaacacagagttactgcagctcagtaaatgatgcttgttcttacagcctacaacacagagaacaaGCATTTAATCagaatatatgatctacaagtttacctaaggtagccccgggggggaatcactacacactgatggtgagtgttagtctgtcagaaactgttggacacgcccagtatgcaaatagattgtgacagaagccaatagaaaagaagctgttaatgaaaacagactaaactcagttattataagttgattcaactcaaagatttcagtttgaatagtacagtacatGTGCTCACAAAttcagttcaactaactcaaaatagttgagtattgtttagaaatatccaattttatgtaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246321 True 559 lncRNA 0.32 1 425437 425995

Neighbor

gene id symbol gene type direction distance location
LOC111195168 NA coding downstream 155077 264960 ~ 270360 (-)
rps6kb2 rps6kb2,LOC108413157,LOC108260512,LOC103368287 coding downstream 194308 207651 ~ 231129 (-)
LOC103027497 LOC108413410 coding downstream 225458 191958 ~ 199979 (-)
LOC103030885 LOC107692594,LOC107702307 coding downstream 234696 109764 ~ 190741 (-)
LOC111195164 NA coding downstream 389924 28644 ~ 35513 (-)
ctnna2 ctnna2 coding upstream 527004 952999 ~ 1099800 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding upstream 953498 1379493 ~ 1390551 (-)
LOC103024763 LOC108434311,LOC108434344 coding upstream 988074 1414069 ~ 1421243 (-)
LOC103025290 LOC108434344,LOC108434311 coding upstream 997044 1423039 ~ 1438417 (-)
trnai-aau_12 NA coding upstream 1102031 1528026 ~ 1528099 (-)
G181891 NA non-coding downstream 11575 413452 ~ 413862 (-)
G181890 NA non-coding downstream 14894 410226 ~ 410543 (-)
G181888 NA non-coding downstream 30234 394976 ~ 395203 (-)
LOC111195159 NA non-coding downstream 101655 322631 ~ 323782 (-)
G181853 NA non-coding downstream 162681 220742 ~ 262756 (-)
G181894 LOC108411976 non-coding upstream 67 426062 ~ 429534 (-)
G181895 NA non-coding upstream 3955 429950 ~ 430644 (-)
G181896 NA non-coding upstream 5194 431189 ~ 433139 (-)
G181902 NA non-coding upstream 58431 484426 ~ 540194 (-)
G181914 NA non-coding upstream 116174 542169 ~ 542440 (-)
LOC103026712 NA other downstream 377143 45736 ~ 48294 (-)
cisd2 cisd2 other upstream 68195 494190 ~ 508064 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 1159500 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 2969124 3395119 ~ 3454586 (-)
G182501 NA other upstream 3121638 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 4681041 5107036 ~ 5109098 (-)

Expression


Co-expression Network