G181894 (LOC108411976)


Basic Information

Item Value
gene id G181894
gene name LOC108411976
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 426062 ~ 429534 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246322
aaactttcgaatacaaaatacaaaataacataacttaagactaaactttttaaaatttcccttcatatataaaatagttttaaagattatttaaaatctgaaatttgttttttttttcccgggtTTTAAACTTAAGATAAACATTGATGTGAACCGataatttagttttaaacaGGTTTTGGCAAaaaagtgaacacacacacgcaaaaaaaattactttcagGCCTAAAAGAGTCAATTACGCAGCcaattacagtaaataattaCCTTTTTTCAACTGTATCTCAAACCCACAGTAATTCACAGACCTCCGACAGGGTTAATCCAGTTTTTACAAAAGAAAAGTCCTCTAAAATCACTCAAAACAAAAAGCCTCGcggaaaaaggagaaaaagtcTAGCTACAGTTTGAAACGCTAGCTAGCTTGTCGGCTATAGCTTATACTGAGCTTACACTCAGAAAACAAGCTAGAACTTAGAAATGAGAATTTACAGCTTTTCtcaaagacaaaaacagaaaagtataattgttttttacatATTGAGGCTATGTTACTTCAGAAATATCTGGAAAAACATCCGTTAGCATTagaaaagctaaagctaactgGCAGGGATTTTCAATGCTTCAGTGTAGATTCTTTGCCCTCTCctcttttcatatttttcttctattttattttagtttaatttgaggaacacaacagcaaaaataaaagctaaacttCTTCTTTTACACAGGATCAATTctaaatacctttttttaactATATCCCAATCCCACAGTAATTTACAGACCTCCGACAGGGTTAATCCAGTGTTTTACAGAAGAAAAGTCCTCTAAAATCACCCGAAACAAAGAAGCCTCGCGGAAAAAGGAGGAAAACGCCAGCTCTGGCCACCCTGTCACCGCTTATCATTTCaggctcttttttttctgcaggaaTGTGAACAGAACTTGACAGTTGAAATTGTCAGGCTGCTTCCTGCGAGCTAAAGCTAAATAGAGCGATCTCACGCACACAGGCGTACGGGGGGAAGGGTTTCCTGCAGCAACCTTTCATCTTCAGCTGATGACACTTTCATACAGTTCGATCCTGAAGGTAGCAGAGCAAGGGCTAAATGCTAactagcagcaacagcagcagcagagttaAAAGCTTCCTCCCAACCCCCTCTAACACCCTCTCAACCTCTTCTGgacccacatacacacaatcccgcagtgtgtgtgtctgcagggTCCAGATAAAACAGTGTAATTCAATGGAATTTGGACGTCCTCATCaattaattactgtattattacacactatttattatctatctatcaccagcactgactgactgatgttTATTACAGGGAGCATCAGACAAATTGAATACTCAACAAATCAGATGTTCGTCTTGAAtgttcttctttttaattgattatcagtttaataataataataataataataataataataataataataataataataataataataataataatagatacaGATGGAAGAGAGCAATACCACTCCAAATAGTAGGGGGCAGTGTAGCcttatacagttctggaaagaaaattaagagagcactcaaaaattatgagtttctttgattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaccaaactgaactgcttgatttttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgataaaaaaactgtgattaaaaaccagaccagggttattccaccaaatattattataatatttctgaactcttaaaactttatgaatatgaacgttttctttgcattatttgaggtctaaaagtggGAACACTGTCGCCATGTTCACACTTTAAATTGCCCTCTATAACATCCATGCAAATGTAAAGAATGCACGCcctgaaattaatattttaggCCAAAACTAAGAACAAacatataaattataaacaaaTTCTTGAAggtaaattattaaatacagaACATGTTATTTTGCAGTTTTTCATTCTCTGATATACTATGTAAAAATGATTCCACAGAACTGACATTTTAGCAAAGAGCTCCACATTCCACGCTGGCTGCAACCTGgtatgtgtgtttagtgtgtgtttaattgtttGTCTAAACCCTTCAGGtcctttttgccatttttggatACATATTTGGTTGACCAAtattttggtgcatctctaCAGTGACGATTACATATTTTGGAATGGACACATTAAAGTTTGGTTGgtttgatttaactttttgttttatgttcgTAAGTATATTCTTACACTGGTAAATGCCCTAAAtagtacacagtgtaatgaaagcTGCTGCTAATGCTGAGAATACAGTTCAAACAGCATTTTGATATGATGAAAACTGGCTATATAAAGCATATCATAGTGCTtcaaagtattattattatttttttttaccatcacAAAGAGTTTTGTAGTCTAGCTACAGTGTGAAACGCTAGCTAGCTTGTCGACTATAGCTTATACTGAGCTTACACTCAGAAAACAAGCTAGAACTTAGAATTTAGAATTTACAGCTTTTCtcaaagacaaaaacagaaaagaatatatatttttttacatattgttaCTTGTTagaaaagctaaagctaactggcagggttttttttcaattcatatttttcttctattttattttagtttaatttgaggaacacaacagcaaaaataaaagctaaactgCTCTTTTTACACAGGATCAATTCTGAATCCTGAAAGCTAGCAAATGACTCAGTTCAAACAGTGATTTCCGCCGCGGTCTTTCACAGTTCCAACCTGATACGATGAAAACTTGCTATATAAAGCGTGTCACAGTCCTTCAAAGTtgtctcatatatatatatatatatatatatatacatatttttggcCCTTAATGACTAAAACCCACAACAACAGGCCTCAAATACACTTCATCTCTCAATCTTCATTTAAGATGCACAATAAAATGGAGCGAAAGATAAACGAGGCAAGATGTTCCTTCTGTCCGTCGTCCCCCCGAGTACTGCAGCATTGGCACACGGTCTTCAGCAGAACTCCTCCTGAGGGTCGCTGGGCGTGTAGGTGATCGCTCTGCTCTTGGTGGAGTGGGAGCAGCCGTTGGGGTGGTGGTTCAGGAGGCTTTTTCGGGTCGGGTTGGTCGAAGGCTCCGTCGGGTCGCACACCGCCACCACGGTGGTCTCCATGCGGGACAGGGTGTACATGCTGCTCTGCCGGGCCACCTGCAGACGCGTAGCCCTCAGCTCCAGCTCGTCGTAGCTGGACAGGCGGACGAAGGGGCACCAGCGGAACGCTCGCTTGAAGCCGGCACGAAac

Function

NR:

description
PREDICTED: neuromedin-K receptor-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246322 True 3435 lncRNA 0.37 2 426062 429534

Neighbor

gene id symbol gene type direction distance location
LOC111195168 NA coding downstream 155702 264960 ~ 270360 (-)
rps6kb2 rps6kb2,LOC108413157,LOC108260512,LOC103368287 coding downstream 194933 207651 ~ 231129 (-)
LOC103027497 LOC108413410 coding downstream 226083 191958 ~ 199979 (-)
LOC103030885 LOC107692594,LOC107702307 coding downstream 235321 109764 ~ 190741 (-)
LOC111195164 NA coding downstream 390549 28644 ~ 35513 (-)
ctnna2 ctnna2 coding upstream 523465 952999 ~ 1099800 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding upstream 949959 1379493 ~ 1390551 (-)
LOC103024763 LOC108434311,LOC108434344 coding upstream 984535 1414069 ~ 1421243 (-)
LOC103025290 LOC108434344,LOC108434311 coding upstream 993505 1423039 ~ 1438417 (-)
trnai-aau_12 NA coding upstream 1098492 1528026 ~ 1528099 (-)
G181893 NA non-coding downstream 67 425437 ~ 425995 (-)
G181891 NA non-coding downstream 12200 413452 ~ 413862 (-)
G181890 NA non-coding downstream 15519 410226 ~ 410543 (-)
G181888 NA non-coding downstream 30859 394976 ~ 395203 (-)
LOC111195159 NA non-coding downstream 102280 322631 ~ 323782 (-)
G181895 NA non-coding upstream 416 429950 ~ 430644 (-)
G181896 NA non-coding upstream 1655 431189 ~ 433139 (-)
G181902 NA non-coding upstream 54892 484426 ~ 540194 (-)
G181914 NA non-coding upstream 112635 542169 ~ 542440 (-)
G181915 NA non-coding upstream 115386 544920 ~ 545284 (-)
LOC103026712 NA other downstream 377768 45736 ~ 48294 (-)
cisd2 cisd2 other upstream 64656 494190 ~ 508064 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 1155961 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 2965585 3395119 ~ 3454586 (-)
G182501 NA other upstream 3118099 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 4677502 5107036 ~ 5109098 (-)

Expression


Co-expression Network