G181895


Basic Information

Item Value
gene id G181895
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 429950 ~ 430644 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246323
GGAattattagcattttttaaatcagacaatactttttatttttttttttaccagcatttaattatttactcagtaatggggagttttccaatgtagcaaagtaaattactcgtgtcaaaatgtacttgagtaaaagtaaaattacctattttaaaaacgacttaaaaaaattacaaattactcataaaatctgctcaattacagtaacttgagtaaatgtaatgcattactttccacctctgtactTTACTTGATATTCTATTTGATCTCCTCAGTAATATCTTCTGAACAAGAGGAACAACTGGTACTTAATGGCTGCTTTGACTGAAATGGGATGAATGAATGCAGATTTTTAAGAACATAATAgaagttgtgtttgtgtgtagagtatgtttgttttgtgtgtgtgtgtgttctctgcagTGGCCACAGGTGGAGTTCTCTCACCTGGAAAATAAACCATTACACTTGAATTTGCCCTGTAGTTAGAAGAACACACTCTAAGGCTTCTGGACGTGCTTTTATCTCACTTCCTCCCCCACTTTAAACCAATCAATACAGTGTTGTATCATTCCAGCAtactgaaataattaaatacttataattttactgaattttaaacaaaataagttcaatttaattttttgtattgtgtaaacagtttgtataaaatatcattaagtatgtattatta

Function

GO:

id name namespace
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU246323 True 695 lncRNA 0.30 1 429950 430644

Neighbor

gene id symbol gene type direction distance location
LOC111195168 NA coding downstream 159590 264960 ~ 270360 (-)
rps6kb2 rps6kb2,LOC108413157,LOC108260512,LOC103368287 coding downstream 198821 207651 ~ 231129 (-)
LOC103027497 LOC108413410 coding downstream 229971 191958 ~ 199979 (-)
LOC103030885 LOC107692594,LOC107702307 coding downstream 239209 109764 ~ 190741 (-)
LOC111195164 NA coding downstream 394437 28644 ~ 35513 (-)
ctnna2 ctnna2 coding upstream 522355 952999 ~ 1099800 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding upstream 948849 1379493 ~ 1390551 (-)
LOC103024763 LOC108434311,LOC108434344 coding upstream 983425 1414069 ~ 1421243 (-)
LOC103025290 LOC108434344,LOC108434311 coding upstream 992395 1423039 ~ 1438417 (-)
trnai-aau_12 NA coding upstream 1097382 1528026 ~ 1528099 (-)
G181894 LOC108411976 non-coding downstream 416 426062 ~ 429534 (-)
G181893 NA non-coding downstream 3955 425437 ~ 425995 (-)
G181891 NA non-coding downstream 16088 413452 ~ 413862 (-)
G181890 NA non-coding downstream 19407 410226 ~ 410543 (-)
G181888 NA non-coding downstream 34747 394976 ~ 395203 (-)
G181896 NA non-coding upstream 545 431189 ~ 433139 (-)
G181902 NA non-coding upstream 53782 484426 ~ 540194 (-)
G181914 NA non-coding upstream 111525 542169 ~ 542440 (-)
G181915 NA non-coding upstream 114276 544920 ~ 545284 (-)
G181921 NA non-coding upstream 128296 558940 ~ 564921 (-)
LOC103026712 NA other downstream 381656 45736 ~ 48294 (-)
cisd2 cisd2 other upstream 63546 494190 ~ 508064 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 1154851 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 2964475 3395119 ~ 3454586 (-)
G182501 NA other upstream 3116989 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 4676392 5107036 ~ 5109098 (-)

Expression


Co-expression Network