G181896


Basic Information

Item Value
gene id G181896
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 431189 ~ 433139 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246324
AGAAATTCAATATTTGCTTTTGttatgtaaaagaaaagaagaactACTCACTGAAAACTACCTTATAATAGATACTCGATAATAGTGGGTGCCCACCAGAATATATGTATTCTTTCTtacaaattttaatttttaatcaacAATATTTGTAAGATTTGTCACATTTCTTCATctttttaagaaaagaaaatagagtAATACAGAAAATAGGCAGCAGTAGTTAAGATTTGGTGGAAgtcagatggatggatggataaactCTCTTTATAAAGGCCACTCTACTCTTTAATAACCTTACAAATATTGTTTGAGACCAGTTTTCACAAAGCTGAAAACctgcttgtttttttagcttttggtaTTGAATTTGGTTTCCCCTTAAATATAAAGGCTGCAGAATTCTGGGTGTTTTGTTGTAAGACATCAGGAAATTATGATAAACTGATATCCTGGTTCTGTTCAATCGGGTTTGTTGATTGTGGTGTGAATGGGCACCAGTATTTAAGGTGctctcatgtctatgttaccttctggctctatACCTTTATTTAGGCTGTTATATTCTAATCTACTGTAGTCGTTATGCACCCATTTAGAAATGTTTCCATCTCTTTACCTTTCCCTCTCTTTACCTTTacccactgccaagatagcaatgaacacctGACTGTTGACAtatgtctaggttgtattcagtcagtggcgcacctgtgttttctgtgttttctgttgccagaCATTTACCAATATGCCAATATGCCAGACATTTACCTGGACAAGTATTCAAATTGTTGTTTaagttttattgttgttttgcttttattattagCACATTTTAGCAATTGCCCATTGACTtctattataacaatattttctaaatattaaaatgattgaaaagATGAGAATTGCTGTCTGTGCTAATGAATCACATGCTACAGAAGCTGTAGATCAGGCTGAGAAATACCCCAGCATTCCtttaaatagaatataataacTATATACTATTGATCTCTTTACAtgaatatacaatacaatatctCATATAGCTCTTAAATAGAGTTCAATACAGAAGAATCCACGAAAACATGAGAACTTTAACAGACGACAGAGTGACGCACATCACACACACGTGCCTTAAAACACAATCATGAAGAGTACTTTCAAAACGTCTGAACATTCAGTTGGTAGGCggtacatactgtatacatacaGTCTTATttacagagaaagaaacagcCGAAACTAAAGTCCAAACTGCGAAGAAAAAAGCGCTCCGTCTCCAAGAAGCAGCGAAAGGAATTAAGTTACGCTTTCAGTTCAACGCAATCCATTACCGTTACGACAAAAGGAATCCAGAGCTGCTGAGAAATACATTCATTCAGATGCTTTTACAGGAATGAAGAGTGGAGAGGGGGAGGAGTTTCCAAGCGTCATGCCTGAAAGGCCAGCAGCGATAGAAATACATTCAGTTAACAgaattacagttattacacGCTGTTAATCTGAAACACACAAAGAGCACACGTCTGAAGAATCTGTAGAGCACATGTTTTAAAGAAAGTAACggctttaaaaaaggttttatctgTCAGATCTGTATCTGTAGATGCACTCATGCTAATGCATTCACGACGTATGTACCACTATAAGATGTTATAGCTTTcatataaaataacttttaaaccaAATAGACTCTAGAGTctctataaacatttttaaaccagTTTTACTGTACACTTACTCACTGTATTATACCTATTCTCTTAATGGACACTTATATACAGATATTTACTGTAGTAATACGCAATCTGCTGACAactgttttatatatgttatatacaattatataacATGCCTTTCTCAGAAACACAGATCCAAACCATACgtgtcttatttaaaaaaaagaacatttttcaGAAAAAGACTTTTCATCTAAAGGGGCGATTTTggt

Function

GO: NA

KEGG:

id description
ko04022 cGMP-PKG signaling pathway
ko05410 Hypertrophic cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU246324 True 1951 lncRNA 0.34 1 431189 433139

Neighbor

gene id symbol gene type direction distance location
LOC111195168 NA coding downstream 160829 264960 ~ 270360 (-)
rps6kb2 rps6kb2,LOC108413157,LOC108260512,LOC103368287 coding downstream 200060 207651 ~ 231129 (-)
LOC103027497 LOC108413410 coding downstream 231210 191958 ~ 199979 (-)
LOC103030885 LOC107692594,LOC107702307 coding downstream 240448 109764 ~ 190741 (-)
LOC111195164 NA coding downstream 395676 28644 ~ 35513 (-)
ctnna2 ctnna2 coding upstream 519860 952999 ~ 1099800 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding upstream 946354 1379493 ~ 1390551 (-)
LOC103024763 LOC108434311,LOC108434344 coding upstream 980930 1414069 ~ 1421243 (-)
LOC103025290 LOC108434344,LOC108434311 coding upstream 989900 1423039 ~ 1438417 (-)
trnai-aau_12 NA coding upstream 1094887 1528026 ~ 1528099 (-)
G181895 NA non-coding downstream 545 429950 ~ 430644 (-)
G181894 LOC108411976 non-coding downstream 1655 426062 ~ 429534 (-)
G181893 NA non-coding downstream 5194 425437 ~ 425995 (-)
G181891 NA non-coding downstream 17327 413452 ~ 413862 (-)
G181890 NA non-coding downstream 20646 410226 ~ 410543 (-)
G181902 NA non-coding upstream 51287 484426 ~ 540194 (-)
G181914 NA non-coding upstream 109030 542169 ~ 542440 (-)
G181915 NA non-coding upstream 111781 544920 ~ 545284 (-)
G181921 NA non-coding upstream 125801 558940 ~ 564921 (-)
G181923 NA non-coding upstream 131968 565107 ~ 565359 (-)
LOC103026712 NA other downstream 382895 45736 ~ 48294 (-)
cisd2 cisd2 other upstream 61051 494190 ~ 508064 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 1152356 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 2961980 3395119 ~ 3454586 (-)
G182501 NA other upstream 3114494 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 4673897 5107036 ~ 5109098 (-)

Expression


Co-expression Network