G181921


Basic Information

Item Value
gene id G181921
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 558940 ~ 564921 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246354
gagctcttcaaagagctcttactctcctaacacctctaactaactaccttctactaccagatcaggagaatctctcactatctttaataataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaacacactaactacttctaacctcatttccttcttcccctccttcactcctctatcccattatttccctt
>TU246355
gagctcttcaaagagctcttactctcctaacacctctaactaactaccttctactaccagatcaggagaatctctcactatctttaataataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaactaactaccttctactaccagatcaggagaagctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246354 False 213 lncRNA 0.41 2 558940 564921
TU246355 True 234 lncRNA 0.40 2 564585 564921

Neighbor

gene id symbol gene type direction distance location
LOC111195168 NA coding downstream 288580 264960 ~ 270360 (-)
rps6kb2 rps6kb2,LOC108413157,LOC108260512,LOC103368287 coding downstream 327811 207651 ~ 231129 (-)
LOC103027497 LOC108413410 coding downstream 358961 191958 ~ 199979 (-)
LOC103030885 LOC107692594,LOC107702307 coding downstream 368199 109764 ~ 190741 (-)
LOC111195164 NA coding downstream 523427 28644 ~ 35513 (-)
ctnna2 ctnna2 coding upstream 388078 952999 ~ 1099800 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding upstream 814572 1379493 ~ 1390551 (-)
LOC103024763 LOC108434311,LOC108434344 coding upstream 849148 1414069 ~ 1421243 (-)
LOC103025290 LOC108434344,LOC108434311 coding upstream 858118 1423039 ~ 1438417 (-)
trnai-aau_12 NA coding upstream 963105 1528026 ~ 1528099 (-)
G181915 NA non-coding downstream 13656 544920 ~ 545284 (-)
G181914 NA non-coding downstream 16500 542169 ~ 542440 (-)
G181902 NA non-coding downstream 18746 484426 ~ 540194 (-)
G181896 NA non-coding downstream 125801 431189 ~ 433139 (-)
G181895 NA non-coding downstream 128296 429950 ~ 430644 (-)
G181923 NA non-coding upstream 186 565107 ~ 565359 (-)
G181930 NA non-coding upstream 64997 629918 ~ 663234 (-)
G181932 NA non-coding upstream 92745 657666 ~ 658128 (-)
G182038 NA non-coding upstream 353360 918281 ~ 924087 (-)
G182044 NA non-coding upstream 399349 964270 ~ 965113 (-)
cisd2 cisd2 other downstream 50876 494190 ~ 508064 (-)
LOC103026712 NA other downstream 510646 45736 ~ 48294 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 1020574 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 2830198 3395119 ~ 3454586 (-)
G182501 NA other upstream 2982712 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 4542115 5107036 ~ 5109098 (-)
G182810 saraf other upstream 4612455 5177376 ~ 5213151 (-)

Expression


Co-expression Network