LOC111195170


Basic Information

Item Value
gene id LOC111195170
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1547201 ~ 1554782 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246443
acgCAGCCCTCGCCTCGAGCTCCAGCAGGctaatataaataatgatttatttctGTTCAGGAGAGAAACTGCGGCGGAGCTGGAGGAACAGCAGCCCACCTGAGAGGAGCTTCAGACCGGCCCTGAGATTAATCCCTGGTTGAGGGATCCTTTGTTTGCAACGCCTGCACCATCGAGGAAGGCCACAGCGGACATTCCATCAAAACGCTAAAGAATGCCATGAGGGACATGAGGGTCCTGAAACACCAGCCAGCGTTCTCAAAAACGAAGAGATGCCTAAGAAGAACCACtttcagatttgtttttaaatgggaTGTGGGTGTGAAGATCTTTTTACCCTGGTAAAGAACCTTTATGTCGAGTcaagagaaaattaaacaaTGTGTTCTTAAAGTTACTGTGTaccttatcttattttattgttaaaagttTCTCATCTTCATGTGCCTAACAACTTTCAGAAGACCTGATGGACCTGGTGGAGCAGTTCAAGATCTAATCATGTGGAACATCATGCTTATGCACTTTCTGAAACCTTGCTTTTTTAGTGTGGCCttaaaataacaaagtaaagaaaaacgtTTTTGAAAAA
>TU246448
gcggggctaagctcattctgaaaaacacatcgtccttaactgtaaattcgaattaatggataaaatcgattaattgcccagctctagtgtaaacacacccaagGCCCAATTAAAACAGATGACAACAAATCGTATCACTCAGACCACGTTCCAATCTGATTAGGACACTGGTACTAGTGACATGACGTGACCCAGGTGTAAACTGAGCAATTGGGGATCAATTTGTTTAGTGTTTGGTCACTGGCATAATGTTTATGATCTGATGCTATATTTCTGTTAACTCTtgcttacatttacatttgctgctttttaaatgttttaatttgatcCTCAAATATTTGCCAACATTTAAGGAGAATGAGATAAAGAGGGTGATCAGctggatatataaatatacagtaccagtcaaaagtttggacacgcctcCAATAATAACAGTGTTtcgttattttaaaaaatgtttctgcATTGTGATTAAAACTCATCTtctaagtcatccaaactatgaagcaAAACATccgtaattatttatttaacaaagtagaatattttagattcttcagagTAGGCATCTTGGTAAGAAAAggttactttaagaaatgaaggtcagtcaatcaaaaaaatgtcaaatttgAATGTAGGTGTAGTCGCAAAGGCCATCAAAATAATCTAacgaaactggctctcatcaggaccgccccaggagaggaagagcaagcattacctctgttgcacaagataagtttatcagagttaccaacctcagaaaccgcaagttagcAGCTCcctagataagagcatctaaaagcttcttatttttatttagtttggtttgtttaacacttttaagttactgcataattcaatatgtgttccttcatagtctggatgacttaagtattaatttataatgtagatttaaaaataatacattcagtaaaaacattgaataagacagtgtgtccaaacttttaactcgTACTGTATATGGTTaattagagctgggcaatatgactatattttatgatattgtgatcttttttttttttcttgtgtcgACAGTATGTTTTTTTGAAGCATATTGAgatttgttaaatgttaaaagaaCAACACTGACCCCAACtggtacatttcattacagaaacagtaaacaaatgGATGATGTGCAgctaaaataacagttttaaagCAGTTGAATgtcaaaataattacaaataaataatacaaattatatacagggaaaaatatttgttgaaaATATCATGGTATTGTTTtacatatcgcccagctctatggTTAATGACATCACACGCAGTAAAGGAAgtacgatttttaaaaaaaatcagaattgaattgaaattgaTTGTTGAGTCGAAATCAGCTCAAGCTGTTGCTCTTAATACATTGGTTACCTCCTCAAGAATCTTCTAGAATGGTGTCATTAAGCTTCTACGCTGACATAGCCGCGAATGTGGGGGAGGTGTGTGTAGAGGAATCTACTTGTATCCATTGTGTACTGGTTTGTACTGGTTGGATGAACGTTATTACTTCACAACACAGCTGAGAAAAGGCTGCATCCGTCTTTAATCATGCCTGATTGATTGTTTCTGAAGCTAAATTCTTGGATGGTTGTTGCTGGGTTGAAGTAATGATGTGAAAGACGAGCGTGTGGAAGGTGAACTTTagactctgaattatttaaggCTGATgggaatgcattttttttgttttgttttgtttcttttatttgttttcttttttgtgattgAGTAATGGCCTTTTTATTTGCCGTCTGCATAAAGTGTCATTGCAGCATCTGCATTAGTAA
>XR_002651503.1
AATCAGCGCGCAGGAGGGCGTGGTCTCTCAATACGGGTGGAGCTAAACGCGTTACGGCTGCGTCaccggcgttacgtaatcacgCAGCCCTCGCCTCGAGCTCCAGCAGGctaatataaataatgatttatttctGTTCAGGAGAGAAACTGCGGCGGAGCTGGAGGAACAGCAGCCCACCTGAGAGGAGCTTCAGACCGGCCCTGAGATTAATCCCTGGTTGAGGGATCCTTTGTTTGCAACGCCTGCACCATCGAGGAAGGCCACAGCGGACATTCCATCAAAACGCTAAAGAATGCCATGAGGGACATGAGGGTCCTGAAACACCAGCCAGCGTTCTCAAAAACGAAGAGATGCCTAAGAAGAACCACtttcagatttgtttttaaatgggaTGTGGGTGTGAAGATCTTTTTACCCTGGTAAAGAACCTTTATGTCGAGTcaagagaaaattaaacaaTGTGTTCTTAAAGTTACTGTGTaccttatcttattttattgttaaaagttTCTCATCTTCATGTGCCTAACAACTTTCAGAAGACCTGATGGACCTGGTGGAGCAGTTCAAGATCTAATCATGTGGAACATCATGCTTATGCACTTTCTGAAACCTTGCTTTTTTAGTGTGGCCttaaaataacaaagtaaagaaaaacgtTTTTGAAAAA
>XR_002651504.1
tgatattgtgatcttttttttttttcttgtgtcgACAGTATGTTTTTTTGAAGCATATTGAgatttgttaaatgttaaaagaaCAACACTGACCCCAACtggtacatttcattacagaaacagtaaacaaatgGATGATGTGCAgctaaaataacagttttaaagCAGTTGAATgtcaaaataattacaaataaataatacaaattatatacagggaaaaatatttgttgaaaATATCATGGTATTGTTTtacatatcgcccagctctatggTTAATGACATCACACGCAGTAAAGGAAgtacgatttttaaaaaaaatcagaattgaattgaaattgaTTGTTGAGTCGAAATCAGCTCAAGCTGTTGCTCTTAATACATTGGTTACCTCCTCAAGAATCTTCTAGAATGGTGTCATTAAGCTTCTACGCTGACATAGCCGCGAATGTGGGGGAGGTGTGTGTAGAGGAATCTACTTGTATCCATTGTGTACTGGTTTGTACTGGTTGGATGAACGTTATTACTTCACAACACAGCTGAGAAAAGGCTGCATCCGTCTTTAATCATGCCTGATTGATTGTTTCTGAAGCTAAATTCTTGGATGGTTGTTGCTGGGTTGAAGTAATGATGTGAAAGACGAGCGTGTGGAAGGTGAACTTTagactctgaattatttaaggCTGATgggaatgcattttttttgttttgttttgtttcttttatttgttttcttttttgtgattgAGTAATGGCCTTTTTATTTGCCGTCTGCATAAAGTGTCATTGCAGCATCTGCATTAGTAAACATGACTATTATTCTGAAtcagctgctctgtttgtgtgttttggatggATCAAGCATGACATTATGAACACCACCTTGTTTCCACAACCGTTATCCACCGTTAACCGTTTGTTAGCTCCACTGATCGTTTAGaacactgtagttctgtaataaTAGACTGTAGACCTGTATCTGTTtcattgcatattttattacCCTTCTTTCACTTTGTTCTTTCACAGGACCACCAGAGAGCAGCTAATATTTGGGTGGTatgtcattctcagcactgcagtgagttgCAGTGGCGAGGTAGTGTGTTCTTCCCCCAGAAAGGTCTTCTAATAAAGGACTAGAGCACGATCAACACAAACTGTTCAGCACAtgatgagcttctgtctctgactttacatcgaCAAGGTGGAACAGCTGAGTAGGAGAGAAACTGCGGCGGAGCTGGAGGAACAGCAGCCCACCTGAGAGGAGCTTCAGACCGGCCCTGAGATTAATCCCTGGTTGAGGGATCCTTTGTTTGCAACGCCTGCACCATCGAGGAAGGCCACAGCGGACATTCCATCAAAACGCTAAAGAATGCCATGAGGGACATGAGGGTCCTGAAACACCAGCCAGCGTTCTCAAAAACGAAGAGATGCCTAAGAAGAACCACtttcagatttgtttttaaatgggaTGTGGGTGTGAAGATCTTTTTACCCTGGTAAAGAACCTTTATGTCGAGTcaagagaaaattaaacaaTGTGTTCTTAAAGTTACTGTGTaccttatcttattttattgttaaaagttTCTCATCTTCATGTGCCTAACAACTTTCAGAAGACCTGATGGACCTGGTGGAGCAGTTCAAGATCTAATCATGTGGAACATCATGCTTATGCACTTTCTGAAACCTTGCTTTTTTAGTGTGGCCttaaaataacaaagtaaagaaaaacgtTTTTGAAAAA
>XR_002651505.1
ACTCTAGCGTTGTGGACTGCACCAACCAATCAGCGCGCAGGAGGGCGTGGTCTCTCAATACGGGTGGAGCTAAACGCGTTACGGCTGCGTCaccggcgttacgtaatcacgCAGCCCTCGCCTCGAGCTCCAGCAGGctaatataaataatgatttatttctGTTCAGGAGAGAAACTGCGGCGGAGCTGGAGGAACAGCAGCCCACCTGAGAGGAGCTTCAGACCGGCCCTGAGATTAATCCCTGGTTGAGGGATCCTTTGTTTGCAACGCCTGCACCATCGAGGAAGGCCACAGCGGACATTCCATCAAAACGCTAAAGAATGCCATGAGGGACATGAGGGTCCTGAAACACCAGCCAGCGTTCTCAAAAACGAAGAGATGCCTAAGAAGAACCACtttcagatttgtttttaaatgggaTGTGGGTGTGAAGATCTTTTTACCCTGAAGACCTGATGGACCTGGTGGAGCAGTTCAAGATCTAATCATGTGGAACATCATGCTTATGCACTTTCTGAAACCTTGCTTTTTTAGTGTGGCCttaaaataacaaagtaaagaaaaacgtTTTTGAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246443 False 592 lncRNA 0.43 3 1551547 1554782
TU246448 True 1828 lncRNA 0.34 1 1547201 1549028
XR_002651503.1 False 673 lncRNA 0.45 3 1551466 1554782
XR_002651504.1 False 1753 lncRNA 0.39 4 1548225 1554782
XR_002651505.1 False 580 lncRNA 0.48 4 1551439 1554782

Neighbor

gene id symbol gene type direction distance location
LOC103023290 ptpn9b,LOC108434348,LOC107746013,LOC107702357,LOC107591531,LOC107754144,LOC107551593 coding upstream 2840 1529116 ~ 1544361 (+)
exosc9 exosc9,LOC107656918,LOC107702358,LOC107746036,LOC107591532 coding upstream 19801 1518679 ~ 1527400 (+)
LOC103024236 NA coding upstream 29853 1447702 ~ 1517348 (+)
uchl1 uchl1,LOC107548360,LOC107709457 coding upstream 100683 1441450 ~ 1446518 (+)
LOC103025599 NA coding upstream 134463 1391411 ~ 1412738 (+)
LOC111195172 NA coding downstream 12158 1566940 ~ 1570671 (+)
LOC103022979 NA coding downstream 17160 1571942 ~ 1575056 (+)
LOC111195171 NA coding downstream 24461 1579243 ~ 1582834 (+)
frg1 frg1,LOC107721419,LOC107702291 coding downstream 559001 2113783 ~ 2122581 (+)
LOC103030587 sgcz,LOC107656592,LOC107702328 coding downstream 1114141 2668923 ~ 2935391 (+)
G181982 NA non-coding upstream 168982 1375197 ~ 1378219 (+)
LOC103046702 NA non-coding upstream 553232 915259 ~ 993969 (+)
G181955 NA non-coding upstream 623023 918330 ~ 924178 (+)
LOC111195161 NA non-coding upstream 807735 725081 ~ 739466 (+)
G181934 NA non-coding upstream 870994 675919 ~ 676207 (+)
G182006 NA non-coding downstream 819 1555601 ~ 1555846 (+)
G182012 NA non-coding downstream 35172 1589954 ~ 1592276 (+)
G182016 LOC108441695 non-coding downstream 40995 1595777 ~ 1596627 (+)
G182226 NA non-coding downstream 181976 1736758 ~ 1737124 (+)
G182229 NA non-coding downstream 206074 1760856 ~ 1761176 (+)
G181818 NA other upstream 1155071 391614 ~ 392130 (+)
LOC111195149 NA other upstream 1157035 289010 ~ 390166 (+)
LOC111195150 NA other upstream 1240889 300095 ~ 306312 (+)
G181801 NA other upstream 1260920 282076 ~ 286281 (+)
G181799 NA other upstream 1269028 276671 ~ 278173 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 902782 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 970901 2525683 ~ 2569294 (+)
G182356 NA other downstream 1701585 3256367 ~ 3258850 (+)
G182361 NA other downstream 1733156 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 2815135 4369917 ~ 4431946 (+)

Expression


Co-expression Network