G182158 (LOC108413195)


Basic Information

Item Value
gene id G182158
gene name LOC108413195
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1366410 ~ 1373731 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246665
AGCAAAGCTGATTTTTCCCCCGGATTCCAAGTTTGTCTAGAAAGTGTTTCAAAAGGTTTcaacagtaaaagtgcagttcATGTATTTTAATCACCAAATCATTTCCATTTCCATCAAATTACACTTTACGCCTGATACGAAACAAAGCTTCTGCAGTCCAGAAGAACTAATCATTGTTGAAATGCTATTTGGACAAGATTGTCAACCAAGTACAAATACTACCAAGTCAAGGACGTCTAACTAAACCACATGTTAGCTGGGTGAATAACATCTAATTAACATTACATTGGCAATTTTCACAAATGTCAAAGTTAATGCAGAGAAGAACTTCATACAGATTATCGTTTATTTTGTACTCATACAACACCACATGGTCAATAATAGCATAATCAACTGGATGAACTAGTTTTCAGAAAgctcaattacaaaaaaaagctactccaactccataatccAATGCTGTCCATCAATCATTTAATTCCCTGATTTAGACATGCCTTCTTAGAATAtcagaataaagttttaaaaactttttttttctcttatttttccccAATGAAGCATGGCAAATTGTCCTGCCCTTTAATTGTCCTGCTgttagtcagctgtatatcacaTATCACAAGTTGTTTGAATTATTTGGCTGACAATGGCTGAATTGGTGGAAAATGTTTACGTTTTATTTCAGACgaactgaatattttttaagtggcaATACAGGGCATTCATTCACAGTGCCCACCCCACGCCCATCCCCTGGCCCCTGCCAGCACTGCTGTATACAGTATAGAGCAGGTAGTGAGCTAGTGTGCAATGGGTTTTACATTGCATAGTGAAAAGTGGATGTCTTTTCAACTGTAAATtctaaaaatcaaattaaagccCTTTATCAAGTTTTGTGATTACGAAGGGCCACTgcaaaatgtactgtatgtagcgGAAACACTCCATTCTAAAGTAATCCTGAGCGTTACTCCAGAATTTAACCTCAGAAGTGATGAACTTTTTCATCACTTCAGTCTCCAAGCCATAGTATGGAGTTTTCTCCACAAAGACTTCCTCTATACTGGAGTCACTTTAGGTCGGGAGGACGACGCTCAAAAACAGTCCTGCTCTCCTCTTGCTCTCTGTCACACGCTGATCTTGGCGGAGAGTAAAGGCGAGAAGAAGAAGTCGAAGGCGAACTTCACGGCTGACTGAGTGCTCTTCCTCCAGTTGCGCTCAATCTTTACCTGCCGTCCCTCAGGCAGCAGTGAGGATTTACATGCCAGGCAGTGGATTGCCTTCAGTTCAAAAACGGGCAGCTTAGTCCCTAGCTTCCCTTCGATCTTAGTGCTGAACTCCACCATGCTGCCCGGGTCCAGATTCAGCAGGACCTGCTGGAACTCGTGACTTGCGGAGAGGACGATGTCACCGGCTGGGTCGTCCTTCTCGTTGACTCCATCCACCGGCCGACCGACAGTCACCTCGAAGCGATAGCTATCGAAGCGTTTGACGTGACACTGGTGCTTGGCCACAGATTTGATGCGACAGAgctgctcctcctcctgcttCTGGAGAAGAAGAGAGATGTTCACATTTTCTGGGTCCTCAAGATAGGTGTTAGCATTCTGCACAGGTGCACTAGCATTCTGTGGCGAACAAGTGGGATATGCCTCGCCGTAGAGGCACCTCAACCAGTCGCCCATGAAAACCGGCAGGAGGTTGATGAGAGACTGAGCTCCGTTTTCTGTCTCGGCCACCCGGATGTGACGAAACTTTCCGGTCCAGGTGACCCGATGGCCTTCCAGGTGGCTACAGAAGAGCTGGGTCTGAGCCATGCCCTGTCTGC

Function

NR:

description
PREDICTED: wolframin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246665 True 1831 lncRNA 0.44 3 1366410 1373731

Neighbor

gene id symbol gene type direction distance location
ctnna2 ctnna2 coding downstream 266610 952999 ~ 1099800 (-)
LOC111195168 NA coding downstream 1096050 264960 ~ 270360 (-)
rps6kb2 rps6kb2,LOC108413157,LOC108260512,LOC103368287 coding downstream 1135281 207651 ~ 231129 (-)
LOC103027497 LOC108413410 coding downstream 1166431 191958 ~ 199979 (-)
LOC103030885 LOC107692594,LOC107702307 coding downstream 1175669 109764 ~ 190741 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding upstream 5762 1379493 ~ 1390551 (-)
LOC103024763 LOC108434311,LOC108434344 coding upstream 40338 1414069 ~ 1421243 (-)
LOC103025290 LOC108434344,LOC108434311 coding upstream 49308 1423039 ~ 1438417 (-)
trnai-aau_12 NA coding upstream 154295 1528026 ~ 1528099 (-)
LOC103028260 tusc3,LOC108413602 coding upstream 1192632 2566363 ~ 2661226 (-)
G182115 NA non-coding downstream 106079 1259486 ~ 1260331 (-)
G182096 NA non-coding downstream 126843 1217615 ~ 1239567 (-)
G182045 NA non-coding downstream 398146 967526 ~ 968264 (-)
G182044 NA non-coding downstream 401297 964270 ~ 965113 (-)
G182038 NA non-coding downstream 442323 918281 ~ 924087 (-)
G182137 NA non-coding upstream 3246 1376977 ~ 1378219 (-)
G182168 NA non-coding upstream 47063 1420794 ~ 1517315 (-)
G182170 NA non-coding upstream 53631 1427362 ~ 1443999 (-)
G182188 NA non-coding upstream 109879 1483610 ~ 1483865 (-)
G182169 NA non-coding upstream 129514 1503245 ~ 1507171 (-)
cisd2 cisd2 other downstream 858346 494190 ~ 508064 (-)
LOC103026712 NA other downstream 1318116 45736 ~ 48294 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 211764 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 2021388 3395119 ~ 3454586 (-)
G182501 NA other upstream 2173902 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 3733305 5107036 ~ 5109098 (-)
G182810 saraf other upstream 3803645 5177376 ~ 5213151 (-)

Expression


Co-expression Network