G182188


Basic Information

Item Value
gene id G182188
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1483610 ~ 1483865 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246702
tccacgACACACACTCCAGCTCAGTCACCCCCCCGAACGTCACAAAACGCCGCCGGTCCCTAGGAGAGCGCCCTCGGCCGGCGGCCAGGTCGCCCCTGGCAACCCTCGCAGGGGGGGCGGCGAGGATGGAGCCTTTCTCAAGGCAGGCCTGGCACAGCGGGGCGGGGGGCGggtcactgaacacacacacacacacacacacacaaacaccacatgCATACAGACGCA

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU246702 True 228 lncRNA 0.67 2 1483610 1483865

Neighbor

gene id symbol gene type direction distance location
LOC103025290 LOC108434344,LOC108434311 coding downstream 45193 1423039 ~ 1438417 (-)
LOC103024763 LOC108434311,LOC108434344 coding downstream 62367 1414069 ~ 1421243 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding downstream 93059 1379493 ~ 1390551 (-)
ctnna2 ctnna2 coding downstream 383810 952999 ~ 1099800 (-)
LOC111195168 NA coding downstream 1213250 264960 ~ 270360 (-)
trnai-aau_12 NA coding upstream 44161 1528026 ~ 1528099 (-)
LOC103028260 tusc3,LOC108413602 coding upstream 1082498 2566363 ~ 2661226 (-)
tlr3 NA coding upstream 1664296 3148161 ~ 3157508 (-)
ankrd37 ankrd37 coding upstream 1817555 3301420 ~ 3306306 (-)
LOC103040979 slc25a4,LOC107656452,LOC107562743 coding upstream 1853966 3337831 ~ 3341350 (-)
G182170 NA non-coding downstream 39611 1427362 ~ 1443999 (-)
G182137 NA non-coding downstream 105391 1376977 ~ 1378219 (-)
G182144 NA non-coding downstream 108533 1330992 ~ 1375077 (-)
G182158 LOC108413195 non-coding downstream 109879 1366410 ~ 1373731 (-)
G182115 NA non-coding downstream 223279 1259486 ~ 1260331 (-)
G182169 NA non-coding upstream 19380 1503245 ~ 1507171 (-)
G182206 exosc9 non-coding upstream 40610 1524475 ~ 1527380 (-)
G182215 NA non-coding upstream 63356 1547221 ~ 1549039 (-)
G182212 NA non-coding upstream 74910 1558775 ~ 1565978 (-)
G182222 NA non-coding upstream 87555 1571420 ~ 1590782 (-)
cisd2 cisd2 other downstream 975546 494190 ~ 508064 (-)
LOC103026712 NA other downstream 1435316 45736 ~ 48294 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 101630 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 1911254 3395119 ~ 3454586 (-)
G182501 NA other upstream 2063768 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 3623171 5107036 ~ 5109098 (-)
G182810 saraf other upstream 3693511 5177376 ~ 5213151 (-)

Expression


Co-expression Network