G182206 (exosc9)


Basic Information

Item Value
gene id G182206
gene name exosc9
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1524475 ~ 1527380 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246721
tttatttaacatacatttatttaagacAGTGAACAATTTGATGACATTATTGCATGCTGCCATTCTTCAAATTCATCCGTTTCCTCGTCAGTGTTTGGGTCGCTTGCCTTTGGATTtcGGGGCTTCTGGATTAAGAACCACAACTTCTTCTTCCTCACTGTCCGAAATGACCATCACTTcatCTTTCTctgctttcttcttctttttctcttctttgtcCATCTCTCCTTGACACTCATCTTCCTCGTCTTCCTCCTCCAGACCCCAAGTGCTCTGGACCCCCTCACCCAACTGTCCAGTTCCCGTGGCAACAATAACAGGGGAGGAGACAACTTCCGGAGCAGCTTCCCCTTTGCTTAGGAATTCCTCTGCCATCTCTTGGACGCCAGTCATCTCCACAGGAGCTTCGTCTCTTTTCAGGGCTGTGATTCGCTCTTTAGGCATGGACTCGGCGAAACCGAACCTGCCGCCCTCCTTCCTGACTCGTTTGTCATTTTCCAGCGCTTTGTTGATGAGGTCTGTGATCTCGGAAACTTTCACACTGGCTATTTTACTGCATCTCaggacCTGGTCTTTGAGCAGCATGATGCCTCCGCTGGACTGAATGGAGCAGATCTCCCTGTGTTTATTCATGGCTATGACTAAAAGGCCATCAGTGACCTGCTCCTCTTTTTCACATGGATCCACCAGCAAATACGTGCTGCAGataacagagaaagagaaggaaattATGCGATTGATTGATGAATGATATTGTCTGCAGATTTAAACGGTGGATCATTTTCTTACCCCTGCTGGAAGAAAGCAAAGCTTACA

Function

symbol description
exosc9 Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm; nucleolus; and nucleoplasm. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human EXOSC9 (exosome component 9).

NR:

description
PREDICTED: exosome complex component RRP45

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246721 True 816 lncRNA 0.46 6 1524475 1527380

Neighbor

gene id symbol gene type direction distance location
LOC103025290 LOC108434344,LOC108434311 coding downstream 86058 1423039 ~ 1438417 (-)
LOC103024763 LOC108434311,LOC108434344 coding downstream 103232 1414069 ~ 1421243 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding downstream 133924 1379493 ~ 1390551 (-)
ctnna2 ctnna2 coding downstream 424675 952999 ~ 1099800 (-)
LOC111195168 NA coding downstream 1254115 264960 ~ 270360 (-)
trnai-aau_12 NA coding upstream 646 1528026 ~ 1528099 (-)
LOC103028260 tusc3,LOC108413602 coding upstream 1038983 2566363 ~ 2661226 (-)
tlr3 NA coding upstream 1620781 3148161 ~ 3157508 (-)
ankrd37 ankrd37 coding upstream 1774040 3301420 ~ 3306306 (-)
LOC103040979 slc25a4,LOC107656452,LOC107562743 coding upstream 1810451 3337831 ~ 3341350 (-)
G182168 NA non-coding downstream 7160 1420794 ~ 1517315 (-)
G182169 NA non-coding downstream 17304 1503245 ~ 1507171 (-)
G182188 NA non-coding downstream 40610 1483610 ~ 1483865 (-)
G182170 NA non-coding downstream 80476 1427362 ~ 1443999 (-)
G182137 NA non-coding downstream 146256 1376977 ~ 1378219 (-)
G182215 NA non-coding upstream 19841 1547221 ~ 1549039 (-)
G182212 NA non-coding upstream 31395 1558775 ~ 1565978 (-)
G182222 NA non-coding upstream 44040 1571420 ~ 1590782 (-)
G182227 NA non-coding upstream 209384 1736764 ~ 1737111 (-)
G182228 NA non-coding upstream 228456 1755836 ~ 1756042 (-)
cisd2 cisd2 other downstream 1016411 494190 ~ 508064 (-)
LOC103026712 NA other downstream 1476181 45736 ~ 48294 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other upstream 58115 1585495 ~ 1712137 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 1867739 3395119 ~ 3454586 (-)
G182501 NA other upstream 2020253 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 3579656 5107036 ~ 5109098 (-)
G182810 saraf other upstream 3649996 5177376 ~ 5213151 (-)

Expression


Co-expression Network