G182222


Basic Information

Item Value
gene id G182222
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1571420 ~ 1590782 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246743
ttagcaacattagcctctCAGCTCCAGCGTTAAAGTAAACTATCACtatttgttagctacattagccttaaaATACCACTGCAAACCTAAAGTAGCATCGCttattagcaacattagcctcataACTCCAACGTTACACTGAATAAGCAGTATTTGTCAGCAATGTTAGCCTCACAGCTCGAGTGCTAATTTACAGAAGCACAAATTAAATTGTAGCTGACTGGATTTGAGGTAAAAtgattgtgtgtttttacacaTGTGGTTCCCTCCCCAGCACAATGTTGTTTAAAGACAACTTTAAAGACAAATTTCAACATACTTTCAACGAACAGCTCTGACGAATTTTTAACGTCTTTTTAAACGACACCGTGCTGAGGGGGAGGGGTCAGCTCTCATTCAGTAAGAGGTTTCCGCACTAACGTTAGCTCTTTCTCATCCCcaccttccttccttccttctccCAAAGCCTCCCTAGTGACAGTAATCCACCCGGTCAGCTTCTCGGCTGGCTCGGTGGAGGCGGAAGGTACTGTTTTATTGTCTCATCACCTCCATGACTAGCTGCTCCAGTGTCTGTGCTCTAATCTGTAGTGATGATGTCTGTGCTGGGAGATGTTTAAGAGCACATGGATGCCATTTGTTTTACTCAAATCTCATAGCTACAGTACTGTACCCAGAACTGCATAAAGACACCCATATGTACAAATACAGCACCAGTCCAAAGTTTACAAATCAGATATCAGTGTGGAATTGATGCCTACGTGCTTAAAATAACTAAtggaactaataaaaaaaacatagctaAACATATAGTcactgtctaatgaaaaaccctcaatatatatatatatatatatatatatatatatatatatattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246743 True 879 lncRNA 0.39 2 1571420 1590782

Neighbor

gene id symbol gene type direction distance location
trnai-aau_12 NA coding downstream 43321 1528026 ~ 1528099 (-)
LOC103025290 LOC108434344,LOC108434311 coding downstream 133003 1423039 ~ 1438417 (-)
LOC103024763 LOC108434311,LOC108434344 coding downstream 150177 1414069 ~ 1421243 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding downstream 180869 1379493 ~ 1390551 (-)
ctnna2 ctnna2 coding downstream 471620 952999 ~ 1099800 (-)
LOC103028260 tusc3,LOC108413602 coding upstream 975581 2566363 ~ 2661226 (-)
tlr3 NA coding upstream 1557379 3148161 ~ 3157508 (-)
ankrd37 ankrd37 coding upstream 1710638 3301420 ~ 3306306 (-)
LOC103040979 slc25a4,LOC107656452,LOC107562743 coding upstream 1747049 3337831 ~ 3341350 (-)
helt helt coding upstream 1794783 3385565 ~ 3389256 (-)
G182212 NA non-coding downstream 5442 1558775 ~ 1565978 (-)
G182215 NA non-coding downstream 22381 1547221 ~ 1549039 (-)
G182206 exosc9 non-coding downstream 44040 1524475 ~ 1527380 (-)
G182169 NA non-coding downstream 64249 1503245 ~ 1507171 (-)
G182188 NA non-coding downstream 87555 1483610 ~ 1483865 (-)
G182227 NA non-coding upstream 145982 1736764 ~ 1737111 (-)
G182228 NA non-coding upstream 165054 1755836 ~ 1756042 (-)
G182233 NA non-coding upstream 232965 1823747 ~ 1824053 (-)
G182237 NA non-coding upstream 292260 1883042 ~ 1917025 (-)
G182244 frg1,LOC107702291,LOC107721419 non-coding upstream 522792 2113574 ~ 2122578 (-)
cisd2 cisd2 other downstream 1063356 494190 ~ 508064 (-)
LOC103026712 NA other downstream 1523126 45736 ~ 48294 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 1804337 3395119 ~ 3454586 (-)
G182501 NA other upstream 1956851 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 3516254 5107036 ~ 5109098 (-)
G182810 saraf other upstream 3586594 5177376 ~ 5213151 (-)
LOC111195184 NA other upstream 3695164 5285946 ~ 5295716 (-)

Expression


Co-expression Network