G182237


Basic Information

Item Value
gene id G182237
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1883042 ~ 1917025 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246759
aaaacagtttatttcaggtaattttgaagagtttctattggtccgttcatcaagaaattttgacacagtgtaaaagacagtttgtctgttcaaattatgtactaaactgaaaatcgacaaaaatggagataagtgtttttcataggacagcgacgatatatatatatatatatatatatatgtgtatagtaTGTGTGAGAATTTGAAGCACTGTTACAGGCTATGCTTCATACATACATATGGTGATGGTTATCCACACCACACCACTGAATTGATCCCTGAAGGCAGAAgcaatgaaagagagagagagagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246759 True 318 lncRNA 0.34 2 1883042 1917025

Neighbor

gene id symbol gene type direction distance location
trnai-aau_12 NA coding downstream 354943 1528026 ~ 1528099 (-)
LOC103025290 LOC108434344,LOC108434311 coding downstream 444625 1423039 ~ 1438417 (-)
LOC103024763 LOC108434311,LOC108434344 coding downstream 461799 1414069 ~ 1421243 (-)
LOC103026423 ppp2r2ca,LOC103026423,LOC107692591,LOC107563918,LOC107742501,LOC108413194,LOC107562984 coding downstream 492491 1379493 ~ 1390551 (-)
ctnna2 ctnna2 coding downstream 783242 952999 ~ 1099800 (-)
LOC103028260 tusc3,LOC108413602 coding upstream 649338 2566363 ~ 2661226 (-)
tlr3 NA coding upstream 1231136 3148161 ~ 3157508 (-)
ankrd37 ankrd37 coding upstream 1384395 3301420 ~ 3306306 (-)
LOC103040979 slc25a4,LOC107656452,LOC107562743 coding upstream 1420806 3337831 ~ 3341350 (-)
helt helt coding upstream 1468540 3385565 ~ 3389256 (-)
G182233 NA non-coding downstream 58989 1823747 ~ 1824053 (-)
G182228 NA non-coding downstream 127000 1755836 ~ 1756042 (-)
G182227 NA non-coding downstream 145931 1736764 ~ 1737111 (-)
G182222 NA non-coding downstream 292260 1571420 ~ 1590782 (-)
G182212 NA non-coding downstream 317064 1558775 ~ 1565978 (-)
G182244 frg1,LOC107702291,LOC107721419 non-coding upstream 196549 2113574 ~ 2122578 (-)
G182273 NA non-coding upstream 573383 2490408 ~ 2511119 (-)
G182281 NA non-coding upstream 661445 2578470 ~ 2578730 (-)
G182329 NA non-coding upstream 874249 2791274 ~ 2799158 (-)
G182404 NA non-coding upstream 1108150 3025175 ~ 3035507 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 170905 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 1374978 494190 ~ 508064 (-)
LOC103026712 NA other downstream 1834748 45736 ~ 48294 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other upstream 1478094 3395119 ~ 3454586 (-)
G182501 NA other upstream 1630608 3547633 ~ 3550413 (-)
LOC103027068 NA other upstream 3190011 5107036 ~ 5109098 (-)
G182810 saraf other upstream 3260351 5177376 ~ 5213151 (-)
LOC111195184 NA other upstream 3368921 5285946 ~ 5295716 (-)

Expression


Co-expression Network