LOC103029952 (fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011)


Basic Information

Item Value
gene id LOC103029952
gene name fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 2457564 ~ 2460672 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246772
GCCGCTCCGGACCTCGCGCTGCTGAAGGGCGCGCTCAGGCGCAGACAGCTGTACTGCAGGACGGGACACCACCTTCAGATCCTGCCCGACGGAACCGTGCAGGGCACGAGACAGGACCACAGCCCCACCGGCATTCTGGAGTTCATCAGCCTCGCCGTGGGCTTGGTCAGCATCCGCGGTGTGGACAGCGGCCTGTACCTGGGCATGGACAGCAAAGGACAACTCTATGGCTCGgAGAAGCTGACGGCTGAGTGCATCTTCCGGGAGCAGTTTGAGGAAAACTGGTACAACACCTACTCGTCCAACCTCTACCGACACGGAGAGCGAGGCCCGCACTACTTTGTCGCACTCAACAAAGACGGGACGTCGAGGGACGGCACCCGTTCCCGGAGGCACCAGAGGTTCACGCACTTCCTACCCCGGCCTGTGGATCCGGAACGGGTACCCGAGCTTTACAAGGAGGTTCTGGGCCACAGCTGACGGAGATCCCGCTCACCTCGGACCTAAAAACGCAACGGCACTTCTACTTCTAGGGCCGCTCCAGAAGAAGGAAGTGGAGTATGGAGGCCCTGGAGAAGCTCCAGGAGAGAACCCTCGCTTACATTTGTGGCAGAGTCAAGTCTGGAGCGAGGGCTGGAGTAACAGAGCACTAAGTGGTTTGGCTTACTTGGGACAACAACTTAAGGGCTTATCATCAAATTTAAGGACAAGAGAAAAATGGCCACCAACGCCAGGTTGACCAATGGATTGATAGCCTGGATTGGAAGGGATTGGCGAGGAGTCCTGCGGTGATTAGCTAGTACTACACCACAAATCTTCCTCAAACGAAGGACATTGGGACCCTGGAATGTTCTGGATATTGGACAGAAATTGAGCTTCTAGGTTGAGTTAAGGCACTCTGGACAAAACTGATCGCTTCTTTTGCTTTGTCAAGTGACAGAAGCCATCCAATGGATGGTCACTGCTGAAACTTCTAGAAAGCTTCTGAAGGAATTCTGCGCTGTTGTGACGATATTTTGTTCAAACACTGGCTGTTCACACTAAACAGAGACTATAAACCTG
>XM_007232597.3
agCTCCTCCCTCATCTATTTCTCTTCGTCCTTGGCTTCCACCTGCCTCCATCTACctctactacacacacacacacaccctctcgcGGGGCtgctcgctctctcactcacttgctgCATGATCAAACCCTTAAATACAaactatacataaaaaaacaacaacaaacagcaACATAAAGCTAACCCACCAGAATCCACGCTGCACGCTCTGCTCTGTAACACttgtttacatgtttacttcAGTCCAGCCTCGGTCTCGTGCCTCCGCTATCTGTTTACCTGACTTCACCCTCTCGTGAACCGAGGATGAGACCAAACAGCCCGTCATCAAAGGAGGCGCGCGCAGGGATCAAACGGAGTTAATGTCGCACCAAAGCGCGGAGAACAGAGAGCGCGAGCGCTATAAAGGGGCTCATTTGCATACGTCAAGAGGACATTTACATATGGACCGTACTTAAGCGCGCGAGGAGCACTCCGAGCCTTCAGAAGCGCGTGAGCAGCGCAGTTAGACACAACTCAGGCACGCGCTAACTTTTACTACCTGCTTTTACTCCTTATCTTCTTCAATCCCCTTTATTCCCTTCGTTCCTCCTCGTGCGGTGATGGGAGCGCTGGGTTTCCCGGGCGCGCACGCGGCTGTGCAGGGTCTCGCGCACGGAGGCGCGCACTTCGCGCtcacgcagcagcagcagcagcagcagcttgtgTCCGCGGAGAGGCTCTCGCGCAGCGCCGCTCCGGACCTCGCGCTGCTGAAGGGCGCGCTCAGGCGCAGACAGCTGTACTGCAGGACGGGACACCACCTTCAGATCCTGCCCGACGGAACCGTGCAGGGCACGAGACAGGACCACAGCCCCACCGGCATTCTGGAGTTCATCAGCCTCGCCGTGGGCTTGGTCAGCATCCGCGGTGTGGACAGCGGCCTGTACCTGGGCATGGACAGCAAAGGACAACTCTATGGCTCGgAGAAGCTGACGGCTGAGTGCATCTTCCGGGAGCAGTTTGAGGAAAACTGGTACAACACCTACTCGTCCAACCTCTACCGACACGGAGAGCGAGGCCCGCACTACTTTGTCGCACTCAACAAAGACGGGACGTCGAGGGACGGCACCCGTTCCCGGAGGCACCAGAGGTTCACGCACTTCCTACCCCGGCCTGTGGATCCGGAACGGGTACCCGAGCTTTACAAGGAGGTTCTGGGCCACAGCTGACGGAGATCCCGCTCACCTCGGACCTAAAAACGCAACGGCACTTCTACTTCTAGGGCCGCTCCAGAAGAAGGAAGTGGAGTATGGAGGCCCTGGAGAAGCTCCAGGAGAGAACCCTCGCTTACATTTGTGGCAGAGTCAAGTCTGGAGCGAGGGCTGGAGTAACAGAGCACTAAGTGGTTTGGCTTACTTGGGACAACAACTTAAGGGCTTATCATCAAATTTAAGGACAAGAGAAAAATGGCCACCAACGCCAGGTTGACCAATGGATTGATAGCCTGGATTGGAAGGGATTGGCGAGGAGTCCTGCGGTGATTAGCTAGTACTACACCACAAATCTTCCTCAAACGAAGGACATTGGGACCCTGGAATGTTCTGGATATTGGACAGAAATTGAGCTTCTAGGTTGAGTTAAGGCACTCTGGACAAAACTGATCGCTTCTTTTGCTTTGTCAAGTGACAGAAGCCATCCAATGGATGGTCACTGCTGAAACTTCTAGAAAGCTTCTGAAGGAATTCTGCGCTGTTGTGACGATATTTTGTTCAAACACTGGCTGTTCACACTAAACAGAGACTATAAACCTGTAccaaacatttctttttttaagtacataatTTATGCTTTAAAGAACAagaacatatatttattttatatatttatttatttccaaagtATATTTTTACAGCTATATAAGAGATGTAAAAAGGACGTCAAGAGGGATTTATTTTCTACCACTATAGACAGTGAAATATAACGACACTACTGAAGAAAGAAAGTATTttcttattggtttattattacaatgcaaaaaaaaaactgctatgCTGTTTGTGTCCACACACATGATTGGTCATCCATGTTCGCTTTGTTTTCCTTTTGTCACAATGCAAGGTCTTTACAGAATGTTTCTGGAGTTCATTTGGGAATTAAACAG

Function

symbol description
fgf20a Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Acts upstream of or within anatomical structure homeostasis; fin regeneration; and regulation of bone remodeling. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in caudal fin; dermatocranium; inter-frontal joint; and kidney. Human ortholog(s) of this gene implicated in renal agenesis. Orthologous to human FGF20 (fibroblast growth factor 20).
fgf20 Enables receptor-receptor interaction. Involved in negative regulation of neuron apoptotic process. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Implicated in renal agenesis.

NR:

description
fibroblast growth factor 20

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0031101 fin regeneration biological_process
GO:0060249 anatomical structure homeostasis biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246772 False 1062 TUCP 0.54 3 2458294 2460322
XM_007232597.3 True 2142 mRNA 0.50 3 2457564 2460672

Neighbor

gene id symbol gene type direction distance location
frg1 frg1,LOC107721419,LOC107702291 coding upstream 334983 2113783 ~ 2122581 (+)
LOC111195171 NA coding upstream 874730 1579243 ~ 1582834 (+)
LOC103022979 NA coding upstream 882508 1571942 ~ 1575056 (+)
LOC111195172 NA coding upstream 886893 1566940 ~ 1570671 (+)
LOC103023290 ptpn9b,LOC108434348,LOC107746013,LOC107702357,LOC107591531,LOC107754144,LOC107551593 coding upstream 913203 1529116 ~ 1544361 (+)
LOC103030587 sgcz,LOC107656592,LOC107702328 coding downstream 208251 2668923 ~ 2935391 (+)
LOC103022435 LOC108441326 coding downstream 550999 3011671 ~ 3147270 (+)
LOC103043954 LOC108413760 coding downstream 716960 3177632 ~ 3266112 (+)
LOC103042722 pdli3,LOC103042722,LOC108415769 coding downstream 814214 3274886 ~ 3284974 (+)
ufsp2 ufsp2,LOC107579280 coding downstream 830112 3290784 ~ 3301449 (+)
G182247 NA non-coding upstream 5129 2450497 ~ 2452435 (+)
G182232 NA non-coding upstream 633498 1823845 ~ 1824066 (+)
G182229 NA non-coding upstream 696388 1760856 ~ 1761176 (+)
G182226 NA non-coding upstream 720440 1736758 ~ 1737124 (+)
G182016 LOC108441695 non-coding upstream 860937 1595777 ~ 1596627 (+)
LOC111195152 NA non-coding downstream 1106 2461778 ~ 2516670 (+)
G182268 NA non-coding downstream 162670 2623342 ~ 2623767 (+)
G182315 NA non-coding downstream 334243 2794915 ~ 2796222 (+)
G182316 NA non-coding downstream 383455 2844127 ~ 2844371 (+)
G182287 NA non-coding downstream 417018 2877690 ~ 2936657 (+)
G181818 NA other upstream 2065434 391614 ~ 392130 (+)
LOC111195149 NA other upstream 2067398 289010 ~ 390166 (+)
LOC111195150 NA other upstream 2151252 300095 ~ 306312 (+)
G181801 NA other upstream 2171283 282076 ~ 286281 (+)
G181799 NA other upstream 2179391 276671 ~ 278173 (+)
LOC111195173 NA other downstream 65011 2525683 ~ 2569294 (+)
G182356 NA other downstream 795695 3256367 ~ 3258850 (+)
G182361 NA other downstream 827266 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 1909245 4369917 ~ 4431946 (+)
LOC103029349 NA other downstream 2474911 4935583 ~ 4941134 (+)

Expression


Co-expression Network