LOC111195173


Basic Information

Item Value
gene id LOC111195173
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 2525683 ~ 2569294 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246773
CCATTTTACACCTTTTTAccggaggagaagaggaggaattGTCGGTTTGTCAgaataaagacagagagagagtaaaagcgCAAAGGGGAAAAGTTTCACTTACTCAAAAGAGCCAAACATACCTGGCTAGATTAGATGTTCCTGTAATCTGCAGGTGGATGGAAGAACTTCACGCCCAGTTGCTCGTAAAACGGGGGTGTAGGAACCCCGGAATGGCTTGGGTCAGTTTTTGGATGGAAATGATGAATGTCTTTAAGAACACACTTCTAATCGTTCAGCTGAACACAGCCAATTCACTGCAGGGGGTCAGGATGCCGAGCCAAGCCCATAACAGACAACCCAGGGGTAGCCGTGATACTTGGACCTGAAGATGGACAAAAGGAAGCTAAAGAAGAAGACCACCAGGCCCAGGCCCACCAGACAGATAACTGcaagaagaaaagaaacagaCCGCAGtgatgcctcaacacaccaggagggtgaagactagcacacgcttcctctgatacatgtgaagtcagactccgcctctttttatgctgctgatgatgcagcacTACCATGCAGTCAGCGCactcgaaggaaagcgcagcgactcagttctgatacatcagctcacagacgccctgtgctgtggacatcaccataggagtgatgagggagaGAGCAAAGCAAAGGTCCTCATTAAGAAATGCTATTACCTGTATGAGTGTTCCAGTTTAAGTTTCCTACTTGAAACTAGGAAATTCAGACATCCACGCTCTAATGAAATGCaggaaagctgtgtgtgtgtgtgtataacacCCCCAAAATCACACACAACCTGTGAaacggagtgtgtgtgtgttatgggtctgtgtgtgaaagtgtggcAGCTGTTGTTCTGAGTGAGTGTGAAGTTAATCAGTTGTTAATCAGTGTGTGTTAACCTGCGCTGCAGTGGAGCGACTCCAATTACAGCTCACTGCCCTCAGACACCCAGCTCTAAATTAGccccctatacacacacacacacacacacacacgacttCGTTCTATGACCATGTGTATgttcatcgctgtccaatgaaaaacaagtatctccatttctgtagatttttagtttactacagaaTTTCAACAAActaactgtcccttacactaggccaacatttcttgatgaacagaccaatagaaactcttcaaaatgacctgaaataaactctttacactgacttccattcaaagtgtagaagatttttttttctctctcctgtaaagttgctc
>TU246774
CCATTTTACACCTTTTTAccggaggagaagaggaggaattGTCGGTTTGTCAgaataaagacagagagagagtaaaagcgCAAAGGGGAAAAGTTTCACTTACTCAAAAGAGCCAAACATACCTGGCTAGATTAGATGTTCCTGTAATCTGCAGGTGGATGGAAGAACTTCACGCCCAGTTGCTCGTAAAACGGGGGTGTAGGAACCCCGGAATGGCTTGGGTCAGTTTTTGGATGGAAATGATGAATGTCTTTAAGAACACACTTCTAATCGTTCAGCTGAACACAGCCAATTCACTGCAGGGGGTCAGGATGCCGAGCCAAGCCCATAACAGACAACCCAGAGGAACGGATAAGAGAGGAAAACGACAGGAGCGCTGACGGCCATTAGGAAACAACTCTTCAAGATGAAGCACCcagataaaataaacaattaaatagacaaataaataaaacgagCACTATGTCCAGATTATATGGTGCACTTGCTGCCACTGGCCACTGACCTTGAGGACCTTTCTTTGTTCTTCCACTCCTTGGCTCCTGCAACTGAGCCAACTCCAACAACAATGTTTCAAAATTGAGTACATTGAACAGCATAAACTTTtcaaaaatgtagtttttttcgctgaactccgtggtcctccggtaattttagtcccgtctgtACTCACATCTGAGTTTCGTCTTCTcccgtttaataaaatagctatttgtccacttgTACACTTTGGACGCATGTTTCCACaaagatccacataaacacaacagcgagtggaagtggaggagctact
>XR_002651507.1
AGTCAACATCCCATTAAAATGTATCAGCTGTCCAATTTCACTAATTACTACCTGCTTCTTCCATCCATTTCTCCTGCTTTTCATCTCCATTTTACACCTTTTTAccggaggagaagaggaggaattGTCGGTTTGTCAgaataaagacagagagagagtaaaagcgCAAAGGGGAAAAGTTTCACTTACTCAAAAGAGCCAAACATACCTGGCTAGATTAGATGTTCCTGTAATCTGCAGGTGGATGGAAGAACTTCACGCCCAGTTGCTCGTAAAACGGGGGTGTAGGAACCCCGGAATGGCTTGGGTCAGTTTTTGGATGGAAATGATGAATGTCTTTAAGAACACACTTCTAATCGTTCAGCTGAACACAGCCAATTCACTGCAGGGGGTCAGGATGCCGAGCCAAGCCCATAACAGACAACCCAGtgggTGGAGCTTGTTTTTTCTGAACTCCCCCGCACTCCAGATGGTCAGTggaacacacacagctgctggaCCCAGAGGGGGCCGGTCCCGCCGAGGAAGAACCCAGAAACCCCTTCAGgctctaaacacaaacaaacaaacaagtgaGCAAGAATTATCACTGTCAACACCAGCGGCTCGACTTCACAGTGACTGAACACAGCGAGCGAGAGAGCGGGCGAGCAAGaccgcgcgagagagagagattttctAAGCTCTCGCTGTAGAGTAATTCCACGTCCCTCATGGGGTATAAAGCCGGAATGTCGGCGCTGAAAAACAGTGTCCTGTGTTGTTGTAGAATGGAATATGTAAAGGAAGGGGGTTCGTGTCTTTGGGCTGTTTTTGTTGAgagatttctcattttcttcagaATTATACTCTTTGCAGGAGCGTTGCAgtctaaacat

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
TU246773 True 1266 TUCP 0.45 4 2525769 2569294
TU246774 False 793 lncRNA 0.44 3 2525769 2562125
XR_002651507.1 False 878 lncRNA 0.47 3 2525683 2532777

Neighbor

gene id symbol gene type direction distance location
frg1 frg1,LOC107721419,LOC107702291 coding upstream 403102 2113783 ~ 2122581 (+)
LOC111195171 NA coding upstream 942849 1579243 ~ 1582834 (+)
LOC103022979 NA coding upstream 950627 1571942 ~ 1575056 (+)
LOC111195172 NA coding upstream 955012 1566940 ~ 1570671 (+)
LOC103023290 ptpn9b,LOC108434348,LOC107746013,LOC107702357,LOC107591531,LOC107754144,LOC107551593 coding upstream 981322 1529116 ~ 1544361 (+)
LOC103030587 sgcz,LOC107656592,LOC107702328 coding downstream 99629 2668923 ~ 2935391 (+)
LOC103022435 LOC108441326 coding downstream 442377 3011671 ~ 3147270 (+)
LOC103043954 LOC108413760 coding downstream 608338 3177632 ~ 3266112 (+)
LOC103042722 pdli3,LOC103042722,LOC108415769 coding downstream 705592 3274886 ~ 3284974 (+)
ufsp2 ufsp2,LOC107579280 coding downstream 721490 3290784 ~ 3301449 (+)
LOC111195152 NA non-coding upstream 9013 2461778 ~ 2516670 (+)
G182247 NA non-coding upstream 73248 2450497 ~ 2452435 (+)
G182232 NA non-coding upstream 701617 1823845 ~ 1824066 (+)
G182229 NA non-coding upstream 764507 1760856 ~ 1761176 (+)
G182226 NA non-coding upstream 788559 1736758 ~ 1737124 (+)
G182268 NA non-coding downstream 54048 2623342 ~ 2623767 (+)
G182315 NA non-coding downstream 225621 2794915 ~ 2796222 (+)
G182316 NA non-coding downstream 274833 2844127 ~ 2844371 (+)
G182287 NA non-coding downstream 308396 2877690 ~ 2936657 (+)
G182318 NA non-coding downstream 317221 2886515 ~ 2887312 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 65011 2457564 ~ 2460672 (+)
G181818 NA other upstream 2133553 391614 ~ 392130 (+)
LOC111195149 NA other upstream 2135517 289010 ~ 390166 (+)
LOC111195150 NA other upstream 2219371 300095 ~ 306312 (+)
G181801 NA other upstream 2239402 282076 ~ 286281 (+)
G182356 NA other downstream 687073 3256367 ~ 3258850 (+)
G182361 NA other downstream 718644 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 1800623 4369917 ~ 4431946 (+)
LOC103029349 NA other downstream 2366289 4935583 ~ 4941134 (+)
G182790 NA other downstream 2857573 5426867 ~ 5427255 (+)

Expression


Co-expression Network