G182316


Basic Information

Item Value
gene id G182316
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 2844127 ~ 2844371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246855
GCCCTCGGCCTCGGGAACAGACACTGAGCTGAAAGTGAACTCTGGAGACAGGAAGTGATCGTCTGTGTGCAGCACGACCTGCTTTCAGCCTCCTGCTGGATCACAGACCACCAtcacagagagacagggagagagacagggagagagacagcaaaATGAATCTGAGACCACATAAAGAGAAAACAGTACTAGAGAATAGataggtggctgctgtggtattaCAGCTGTTTGATGGAGTGTTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246855 True 245 lncRNA 0.50 1 2844127 2844371

Neighbor

gene id symbol gene type direction distance location
frg1 frg1,LOC107721419,LOC107702291 coding upstream 721546 2113783 ~ 2122581 (+)
LOC111195171 NA coding upstream 1261293 1579243 ~ 1582834 (+)
LOC103022979 NA coding upstream 1269071 1571942 ~ 1575056 (+)
LOC111195172 NA coding upstream 1273456 1566940 ~ 1570671 (+)
LOC103023290 ptpn9b,LOC108434348,LOC107746013,LOC107702357,LOC107591531,LOC107754144,LOC107551593 coding upstream 1299766 1529116 ~ 1544361 (+)
LOC103022435 LOC108441326 coding downstream 167300 3011671 ~ 3147270 (+)
LOC103043954 LOC108413760 coding downstream 333261 3177632 ~ 3266112 (+)
LOC103042722 pdli3,LOC103042722,LOC108415769 coding downstream 430515 3274886 ~ 3284974 (+)
ufsp2 ufsp2,LOC107579280 coding downstream 446413 3290784 ~ 3301449 (+)
cfap97 NA coding downstream 479390 3323761 ~ 3336839 (+)
G182315 NA non-coding upstream 47905 2794915 ~ 2796222 (+)
G182268 NA non-coding upstream 220360 2623342 ~ 2623767 (+)
LOC111195152 NA non-coding upstream 327457 2461778 ~ 2516670 (+)
G182247 NA non-coding upstream 391692 2450497 ~ 2452435 (+)
G182232 NA non-coding upstream 1020061 1823845 ~ 1824066 (+)
G182287 NA non-coding downstream 33319 2877690 ~ 2936657 (+)
G182318 NA non-coding downstream 42144 2886515 ~ 2887312 (+)
G182334 NA non-coding downstream 134682 2979053 ~ 2979366 (+)
G182343 NA non-coding downstream 270516 3114887 ~ 3115698 (+)
G182351 NA non-coding downstream 386517 3230888 ~ 3269218 (+)
LOC111195173 NA other upstream 274833 2525683 ~ 2569294 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 383455 2457564 ~ 2460672 (+)
G181818 NA other upstream 2451997 391614 ~ 392130 (+)
LOC111195149 NA other upstream 2453961 289010 ~ 390166 (+)
G182356 NA other downstream 411996 3256367 ~ 3258850 (+)
G182361 NA other downstream 443567 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 1525546 4369917 ~ 4431946 (+)
LOC103029349 NA other downstream 2091212 4935583 ~ 4941134 (+)
G182790 NA other downstream 2582496 5426867 ~ 5427255 (+)

Expression


Co-expression Network