G182351


Basic Information

Item Value
gene id G182351
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3230888 ~ 3269218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246902
tttttaatcacagtttttaatcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgcctgcactcctggtgcaaacatttaagcagttcagtttggtggtttgtgatcatccatcttcctcttgattatattcgagttttttttttgtttttttttttgtaaaattaaagaaacccatcattttttgATATGTGGTGTCAAATATCTGTATTTCTATTGAAACATAGGCGCTCTCCTTAAAACTCGTCCCCAATTAGACTTTCCTAAAGTTAGTGCTTCATTACGACACaaggtggcgctataatcaaataaatatggtaaaaaaaaaaactgcaatgaAGCATATTGGCTGTCAAAttatgtgaaactgacaccaataaatgcataaaataataatttcttatttagaagtttttttatCCTCTTCGGAAACGATTGTCTTGCAATATATCGAGTATCACAATGTATCGTTATTATAGTATTGTGATTCCCACCCCATGTAGACAGCGAGctcagtggatggtaatgattggGATCGGCGGCGAACAGATAAGCCATTCAAGCCACCAACTGGAGGTTCCTTAAAGGAGaagtctggtgtgaaatggacttgggtgtagtgaaacatatgATAATAAGTATGAACTTTTGTCTAATAGTTCGCCTCCGTTCACCCCctgcattctgaaatacagcacttttagctgatgctgccaacaggtttacaatgctagtgataggggcataaatTTGCTCATGCTAAGAAATTGCTATTTCACACCAATAACAAACTTAAAGttgctccaaacttcattggtagaattatGAAGGCACAGATGTTGACTAAAGTTcacttaaaaaacattgtttatacacacagtaccttcagatagATCTCCAgtgccgccatcttgaaattaagtcatgatAAATCAGCTGACGGGCATAGACGTATAGGCAGGACCAATCTGCTAATCTTTTAGTGCCATATATACCATAGGACACGTTCAAACGTTTGGTAGAGACCACTCTatgataaaatgtgtttgtgggCGAAgaatttaagatttaaaaggtCTGAAATATCaactttataaactttataatCTATTTACAGTACCTACAGAGAGTTGTGGTTGTGGATGGAGCAATAAATGGTCCATTATTTTTTCGAAATGTCTTCAAGACTTGTCCCCTTGACTACTACTGGACATTTCTTGAAACGTCTTCATAACTTCAGTGATTTCGatataaacagtcatttagaTATGGTTTAGTATGAAACTGTCCATTGTAAGAAACCAGGGCTCCCTATGACAACACACAGATATAAccactgtattttgtattttttaacaatcAGACAACATTAGGGCTGTAACAAAGCAACATGACACGATGCATCACGGTGAACAAAATGTGACTATGTGCATTGTGGGAACAGACGATTCCACgtttttttccttgtttattaTGCACCTCATGCTTGTGCAAGCCAGAGAACCAGTGGGCGAAAGCAAAGGGCTTGGGATATGACATTTTATGTCATCGGTTTAGActgaaatcaatcaatcaaacaactGCTTTTTGATGTCagtcactttttattaagccaatcagcagccagattttttttttttgttgctgctgctgctgtctagTAACAGAGATTTACTGTGGTTCTTCTGGTGTTTGTAACGTTTTTACCAGCCCACAATCGAAATTCGAGTTAAGTGAAGTTGAGCTGGCTTAAATGTTAGgatgaaaaatggaaaaatctgtATGGAAAAGGAAAGTtcgttttttccctttttctgtcactctttcacttcttttttttttttctttcataatTGGCGCTCCACGACGTGGCTTTAATCACGAATCTCACTTTGTAAAACGACGACGCACAATATAACAGGCTTCACAGAGTAGTTTGAGGAATATTACGTTTTATAAAAGTGCTCATTTTTACGCCAGTTTTGTTCGATTTGAAAGGTTGAAAATGTTACAGCGATTCAGTATTGAGAGTATTTTCTGCACATGGAGTGTGTAGCCTCACTGTGTTAAActcatgtatttttattatgtttttttgtttgtgatgtacaagtgtgtgtgattgtgtgtgtgtgtgttggatcgACAGATTTAACAGCAATCTTTAAAGCACCTTAAACACATTAGCTGTGAGTGATTTGAGTTTTCTGCACTTTTCTGGTTTGCGTTTGCTTTCAGAAGCTTCACCAgtttgattattattgttttttttttttcgtttgtttgttcgtttgttcatttgttttgtattgtcacatatatatatatcgactTATAAAGACTTATAAAGTCTTGTCTCTGCTCACCGACTCATCGCTttgagtttttctttctttcgttctttctttctttctttgtgtttttcttcGCTCATAAATACCATCCGTGTGCCAAAACATTCCCAAACAATCTAGAAGGAACCTTATGCAAAAATTCAGCACTGGACATTTTTTGggaagaggggaaaaaagcGAAATTACCTCAGTTTGGGACTGAAGAGGAtcgaagagttttttttttttctgctggaaTTTCTCTGGACTTTTTAGACTTTCTGATAAATAAGTaccagacatacacacacacacccaccaacacacacacatgtacatacatatatacctacatacatacatacatagatttGGTTCTCTGGTGTGTCTGTTTAATGGGCttcactccctccctctttctttctttctttttttctttacgcTTTGTCGTTTAATTCAGTATGTAATAAACTTCTTCTCAGTGATCGGCCTCCGTCCTCTTGTTCTCGTTGTCGTGAAGCGAGATCTCCTGGATTCAGTGGAACGTCCTATGGATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246902 True 2918 lncRNA 0.37 2 3230888 3269218

Neighbor

gene id symbol gene type direction distance location
LOC103022435 LOC108441326 coding upstream 83618 3011671 ~ 3147270 (+)
LOC103030587 sgcz,LOC107656592,LOC107702328 coding upstream 295497 2668923 ~ 2935391 (+)
frg1 frg1,LOC107721419,LOC107702291 coding upstream 1108307 2113783 ~ 2122581 (+)
LOC111195171 NA coding upstream 1648054 1579243 ~ 1582834 (+)
LOC103022979 NA coding upstream 1655832 1571942 ~ 1575056 (+)
LOC103042722 pdli3,LOC103042722,LOC108415769 coding downstream 5668 3274886 ~ 3284974 (+)
ufsp2 ufsp2,LOC107579280 coding downstream 21566 3290784 ~ 3301449 (+)
cfap97 NA coding downstream 54543 3323761 ~ 3336839 (+)
LOC103039527 NA coding downstream 75319 3344537 ~ 3380543 (+)
LOC103038692 acsl1,acsl1a,LOC107562746,LOC107702334 coding downstream 129973 3399191 ~ 3437044 (+)
G182343 NA non-coding upstream 115190 3114887 ~ 3115698 (+)
G182334 NA non-coding upstream 251522 2979053 ~ 2979366 (+)
G182287 NA non-coding upstream 294231 2877690 ~ 2936657 (+)
G182318 NA non-coding upstream 343576 2886515 ~ 2887312 (+)
G182316 NA non-coding upstream 386517 2844127 ~ 2844371 (+)
G182363 NA non-coding downstream 37100 3306318 ~ 3311471 (+)
G182369 NA non-coding downstream 61717 3330935 ~ 3332621 (+)
G182371 NA non-coding downstream 61985 3331203 ~ 3397260 (+)
G182373 NA non-coding downstream 62282 3331500 ~ 3331794 (+)
G182374 slc25a4,LOC107656452,LOC107562743 non-coding downstream 68310 3337528 ~ 3339816 (+)
LOC111195173 NA other upstream 661594 2525683 ~ 2569294 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 770216 2457564 ~ 2460672 (+)
G181818 NA other upstream 2838758 391614 ~ 392130 (+)
LOC111195149 NA other upstream 2840722 289010 ~ 390166 (+)
G182361 NA other downstream 18720 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 1100699 4369917 ~ 4431946 (+)
LOC103029349 NA other downstream 1666365 4935583 ~ 4941134 (+)
G182790 NA other downstream 2157649 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 2773470 6042688 ~ 6048474 (+)

Expression


Co-expression Network