LOC111195151


Basic Information

Item Value
gene id LOC111195151
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3492464 ~ 3498694 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU246967
gtgtgcgtgtgtgtgcacgcGCGCTGACGGTGGAGGAGAGAAGCTGCAGTGTTTGAGTCTGGAACTTTGTCTGAAATAAGAGTAAATGTTCCTGCATGTTTACATTAGATTGCTGCTGCTAATGCTTCATAAAATGGCCCCTCCAAGACCAGCAAGGAAAAAGATGCCTGCCAGAGCAGCTGAGGAAAAAGgtgttggacaagtGGGAGGTGTATTGTCTCCAATGATAAGATAGCTTCTTCAAGCAGGGATGCTGAACTTTTATTCATGCCTCATGAATtcatgagctttttttttgtttgtttttgctgtagGGAAATAGAGGTTCattggaaatgttttattttatcatgataattttattgttaaaacatTGGATAAACATTTCTATTGTGTTCTGTATGTTTGTGATTGTGTACTTTCATAAAGTGATCTATTAGGTAGTGACTGTTAAATTACTATTTAGGATACTATAATCCAACGCAGATCTGTCAGAGTAagtgttacactttaaaataagtggacagttcctgtgtagttattgtgtaag
>XR_002651491.1
gtggtgtgtgtgtgtgtgtgcgtgtgtgtgcacgcGCGCTGACGGTGGAGGAGAGAAGCTGCAGTGTTTGAGTCTGGAACTTTGTCTGAAATAAGAGTAAATGTTCCTGCATGTTTACATTAGATTGCTGCTGCTAATGCTTCATAAAATGGCCCCTCCAAGACCAGCAAGGAAAAAGATGCCTGCCAGAGCAGCTGAGGAAAAAGgtgttggacaagtGGGAGGTGTATTGTCTCCAATGATAAGATAGCTTCTTCAAGCAGGGATGCTGAACTTTTATTCATGCCTCATGAATtcatgagctttttttttgtttgtttttgctgtagGGAAATAGAGGTTCattggaaatgttttattttatcatgataattttattgttaaaacatTGGATAAACATTTCTATTGTGTTCTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246967 True 550 lncRNA 0.38 2 3492479 3498694
XR_002651491.1 False 417 lncRNA 0.40 2 3492464 3498546

Neighbor

gene id symbol gene type direction distance location
LOC103038692 acsl1,acsl1a,LOC107562746,LOC107702334 coding upstream 55420 3399191 ~ 3437044 (+)
LOC103039527 NA coding upstream 111921 3344537 ~ 3380543 (+)
cfap97 NA coding upstream 155625 3323761 ~ 3336839 (+)
ufsp2 ufsp2,LOC107579280 coding upstream 191015 3290784 ~ 3301449 (+)
LOC103042722 pdli3,LOC103042722,LOC108415769 coding upstream 207490 3274886 ~ 3284974 (+)
LOC103037633 NA coding downstream 25502 3524196 ~ 3535052 (+)
LOC103037959 NA coding downstream 37669 3536363 ~ 3550525 (+)
pcdh18 LOC108413018 coding downstream 316709 3815403 ~ 3827765 (+)
sclt1 sclt1 coding downstream 897121 4395815 ~ 4423038 (+)
LOC103036009 NA coding downstream 976039 4474733 ~ 4479749 (+)
G182396 NA non-coding upstream 12048 3478291 ~ 3480416 (+)
G182371 NA non-coding upstream 95204 3331203 ~ 3397260 (+)
G182374 slc25a4,LOC107656452,LOC107562743 non-coding upstream 152648 3337528 ~ 3339816 (+)
G182369 NA non-coding upstream 159843 3330935 ~ 3332621 (+)
G182373 NA non-coding upstream 160670 3331500 ~ 3331794 (+)
G182492 NA non-coding downstream 27586 3526280 ~ 3526973 (+)
G182507 NA non-coding downstream 161535 3660229 ~ 3660492 (+)
G182509 NA non-coding downstream 167167 3665861 ~ 3666103 (+)
G182510 NA non-coding downstream 167525 3666219 ~ 3666497 (+)
G182511 NA non-coding downstream 215915 3714609 ~ 3714820 (+)
G182361 NA other upstream 202206 3287938 ~ 3290258 (+)
G182356 NA other upstream 233614 3256367 ~ 3258850 (+)
LOC111195173 NA other upstream 923170 2525683 ~ 2569294 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 1031792 2457564 ~ 2460672 (+)
G181818 NA other upstream 3100334 391614 ~ 392130 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 871223 4369917 ~ 4431946 (+)
LOC103029349 NA other downstream 1436889 4935583 ~ 4941134 (+)
G182790 NA other downstream 1928173 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 2543994 6042688 ~ 6048474 (+)
pax5 pax5 other downstream 2752080 6250774 ~ 6367190 (+)

Expression


Co-expression Network