G182530


Basic Information

Item Value
gene id G182530
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3909903 ~ 3917616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU247122
TGCTGCTCAATCTAGGCTGTATcctttgaagaaaaaaaaaggacttttatgTTGAAACTTATGAGACTCTtatgagacttttattttgaaacttgTTGAGTAACAGGAACAGGAAGTAGCATATGAATGCAAGATTTTGCTTTGTCATTCTGATAACTTTGAATGAGCACACTAGTGGAGTGTAATGTGATGCTCGGAAGTTAATCAAGGGGTTTATTTAAAGTGTAAGCTGTTTGGGAAGGCCACTGGTGAGTgaaatcatgtttatttcattttgtgtAAGAAGACATTTGTTGAtagatttaaaatgtatgttgcTGGAAGTGATAAGTGTAATGCTAATTTCATGCTTAGAGATGTTAAGATTAATGTAGCTAAGATGTATGTAGCTCTATTTCTTACTCATTCAGTTGATATTAAGGATTTAGTAAGTTTATATGGtgtccttttttctttatttgaaaGGTTTTCAACCTGATTCTACCTGATTCGTTTTGTTTCTACCTCATTCAACCTTAttgatgttaaaataaaaaaccaaGAAAGGAAGAATCCGAGTTGATCCATGATTGCCCCCCGACAACTTATGCCTTTTTCAAGTTTGGGCTGATTTTAAATATAACACCCCCGGGAAACttgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247122 True 641 lncRNA 0.34 2 3909903 3917616

Neighbor

gene id symbol gene type direction distance location
pcdh18 LOC108413018 coding upstream 82138 3815403 ~ 3827765 (+)
LOC103037959 NA coding upstream 359378 3536363 ~ 3550525 (+)
LOC103037633 NA coding upstream 374851 3524196 ~ 3535052 (+)
LOC103038692 acsl1,acsl1a,LOC107562746,LOC107702334 coding upstream 472859 3399191 ~ 3437044 (+)
LOC103039527 NA coding upstream 529360 3344537 ~ 3380543 (+)
sclt1 sclt1 coding downstream 478199 4395815 ~ 4423038 (+)
LOC103036009 NA coding downstream 557117 4474733 ~ 4479749 (+)
LOC103036626 LOC108414886,LOC108414926,LOC108414927 coding downstream 580421 4498037 ~ 4506712 (+)
LOC103029042 chic2,LOC103029042,LOC108441324,LOC103353160,LOC101486940,LOC106602128 coding downstream 1024805 4942421 ~ 4948100 (+)
LOC103030219 tsn5,tspan5b,LOC108441323,LOC107557938,LOC107692617,LOC107758863,LOC105893813,LOC103360687 coding downstream 1053488 4971104 ~ 4981396 (+)
G182511 NA non-coding upstream 195083 3714609 ~ 3714820 (+)
G182510 NA non-coding upstream 243406 3666219 ~ 3666497 (+)
G182509 NA non-coding upstream 243800 3665861 ~ 3666103 (+)
G182507 NA non-coding upstream 249411 3660229 ~ 3660492 (+)
G182492 NA non-coding upstream 382930 3526280 ~ 3526973 (+)
G182566 NA non-coding downstream 240744 4158360 ~ 4158802 (+)
G182592 NA non-coding downstream 458765 4376381 ~ 4392378 (+)
G182591 NA non-coding downstream 518937 4436553 ~ 4437168 (+)
G182597 hgsnat,LOC108411545,LOC107656620,LOC107565475 non-coding downstream 520368 4437984 ~ 4442647 (+)
G182600 hgsnat,LOC108411545 non-coding downstream 531065 4448681 ~ 4453032 (+)
G182361 NA other upstream 619645 3287938 ~ 3290258 (+)
G182356 NA other upstream 651053 3256367 ~ 3258850 (+)
LOC111195173 NA other upstream 1340609 2525683 ~ 2569294 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 1449231 2457564 ~ 2460672 (+)
G181818 NA other upstream 3517773 391614 ~ 392130 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 452301 4369917 ~ 4431946 (+)
LOC103029349 NA other downstream 1017967 4935583 ~ 4941134 (+)
G182790 NA other downstream 1509251 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 2125072 6042688 ~ 6048474 (+)
pax5 pax5 other downstream 2333158 6250774 ~ 6367190 (+)

Expression


Co-expression Network