G182600 (hgsnat,LOC108411545)


Basic Information

Item Value
gene id G182600
gene name hgsnat,LOC108411545
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4448681 ~ 4453032 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU247224
tcgcAATGGATAAGATAAATAATTCATAGCGGATACTGAATGATTAGTGATGAATGTGGTTACTGTCCTGTGGTAATCTGAGTCAGTAGGTCAGAGTGACTGCTACATTGGGGAACTCACGTGATCCCTGACAGTAGTTGGGGTTGATGATGAAGACTCCAATGATGAAGAGCTGAACACTCCTCCAGCAGATCTTCCACAGCAGACGAGAGCGCTTAATCCCTCGACACACAGCACCGCTCACCGACAGAGCTATGGACGTACCCATGATAAACACAAACCAGGGAAAGACCAGATCAGCCACAGTGAGTCCGTTCCAGCTCTCATGTTTGAAGAACCAATAGCGTCCTCCTCCGTAGTTGACAAACACCATCACCACCAGAGAGAGTCCCCTGAACGTGTCAAGAGAGCGAAGTCTCCTCCCAGGGCTGGCAGGAATTATCGATTCGGTTGACGAATCCACCAGCCTGTTTGGCGAGCCCAGCTCGGAGTTGATGAGTCTTTCGGCCTCCATGGTGCTTCCGAAACGCTGAAGAAGACTGTTCACAGCTTCGAGCCCTCTGACTGAGTTC

Function

symbol description
hgsnat Predicted to enable heparan-alpha-glucosaminide N-acetyltransferase activity. Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in mucopolysaccharidosis type IIIC and retinitis pigmentosa 73. Orthologous to human HGSNAT (heparan-alpha-glucosaminide N-acetyltransferase).

NR:

description
PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247224 True 572 lncRNA 0.50 6 4448681 4453032

Neighbor

gene id symbol gene type direction distance location
sclt1 sclt1 coding upstream 25643 4395815 ~ 4423038 (+)
pcdh18 LOC108413018 coding upstream 620916 3815403 ~ 3827765 (+)
LOC103037959 NA coding upstream 898156 3536363 ~ 3550525 (+)
LOC103037633 NA coding upstream 913629 3524196 ~ 3535052 (+)
LOC103038692 acsl1,acsl1a,LOC107562746,LOC107702334 coding upstream 1011637 3399191 ~ 3437044 (+)
LOC103036009 NA coding downstream 21701 4474733 ~ 4479749 (+)
LOC103036626 LOC108414886,LOC108414926,LOC108414927 coding downstream 45005 4498037 ~ 4506712 (+)
LOC103029042 chic2,LOC103029042,LOC108441324,LOC103353160,LOC101486940,LOC106602128 coding downstream 489389 4942421 ~ 4948100 (+)
LOC103030219 tsn5,tspan5b,LOC108441323,LOC107557938,LOC107692617,LOC107758863,LOC105893813,LOC103360687 coding downstream 518072 4971104 ~ 4981396 (+)
LOC103028516 slc24a2,LOC103028516,LOC108441320,LOC108260852,LOC107665969 coding downstream 542745 4995777 ~ 5031681 (+)
G182597 hgsnat,LOC108411545,LOC107656620,LOC107565475 non-coding upstream 6034 4437984 ~ 4442647 (+)
G182591 NA non-coding upstream 11513 4436553 ~ 4437168 (+)
G182592 NA non-coding upstream 56303 4376381 ~ 4392378 (+)
G182566 NA non-coding upstream 289879 4158360 ~ 4158802 (+)
G182530 NA non-coding upstream 531065 3909903 ~ 3917616 (+)
G182603 LOC108414886,LOC108414926,LOC105010209,LOC107674463,LOC108411552,LOC107750516,LOC108414927 non-coding downstream 25269 4478301 ~ 4506708 (+)
G182606 NA non-coding downstream 60721 4513753 ~ 4514215 (+)
G182607 NA non-coding downstream 61255 4514287 ~ 4514859 (+)
G182673 NA non-coding downstream 397555 4850587 ~ 4851443 (+)
G182674 NA non-coding downstream 398471 4851503 ~ 4852061 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other upstream 16735 4369917 ~ 4431946 (+)
G182361 NA other upstream 1158423 3287938 ~ 3290258 (+)
G182356 NA other upstream 1189831 3256367 ~ 3258850 (+)
LOC111195173 NA other upstream 1879387 2525683 ~ 2569294 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 1988009 2457564 ~ 2460672 (+)
LOC103029349 NA other downstream 482551 4935583 ~ 4941134 (+)
G182790 NA other downstream 973835 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 1589656 6042688 ~ 6048474 (+)
pax5 pax5 other downstream 1797742 6250774 ~ 6367190 (+)
rnf38 rnf38,LOC107551561 other downstream 1992231 6445263 ~ 6498192 (+)

Expression


Co-expression Network