G182603 (LOC108414886,LOC108414926,LOC105010209,LOC107674463,LOC108411552,LOC107750516,LOC108414927)


Basic Information

Item Value
gene id G182603
gene name LOC108414886,LOC108414926,LOC105010209,LOC107674463,LOC108411552,LOC107750516,LOC108414927
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4478301 ~ 4506708 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU247233
AGGAGAGTTTGAGCCTGGATTCATCGCTTTCAGAGTTTTCAACAACGAGAGGGCGGCCATGGCCATCTGCTCTGGAGTCAGACCGACCGGCTGCAATACAGAACATTACTGTATTGGGGGAGGAGGGCATTTCCCGGAAGCGGCACCGAGACAGTGTGGAGATTTTCCCAGTTTTGACTGGAGCGGCTACGGGACTAACACAGAATGGAGCGCCTCCAAAGAGATCACTGAAGCTGCTGTGTTTCTGTTCTACCGCTGAGATCCAGATCACTTCAGACAACTTCAGCTCTATcattctctatctttctttatcTATCCTTTATTATACAGATTATATAGTAAAATCGTTTCTTAATAGGTGATGGTAACTCTTATGTAAAATTATAGATATTACAACATTGACATTATAAAACTGATTAGAAGCAGGCTCCAAATacatgttagctacattagcctcataacAACAGTACTAATTAGTGAATTATAAACTCCAAATatatgttagctacattagcctcataacAACAGTGCTAATTAGTGAATTATAAGCTCCAAATacatgttagctacattagcttcataACAACAGTACTAATTAGTGAATTATAAACTCCAAATATATGTTAGCTACATATTAGCCCCATAACAGCAGTGCTAATTAGTGGAATATAAGCTCCAAATacatgttagctacattagcttcataACAGCAGTACTAATTAGTGAATTATAAACTCCAAATACATGTTAGCTACATATTAGCCTCATAACAACAGTActaattaatgtaatataagctCCAAATACacgttagctacattagcctcataacAACAGTACTAATTAGTGGAACATCAGCTCCAAAATacatgttagctacattagcctcataacAACAGTACTAATTAGTGGAACATCAGCTCCAAATacatgttagctacattagcctcataatAACAGTGCTAATTAGTGAATTATAAGCTCCAAATacatgttagctacattagcctcataacAACAGTGGCATGTTCTTAGGTAAAAGGCTTCCACTACTTGACAGATAGCTACATTAGACTCATATATCTAGCGCTAATTTGTAGGTTATGAACAGTtctattacttgttagctacactAGCCTCATAATAACAGTGCTAATTAGTGAAATATAAGTTCCAAATacatgttagctacattagcctcataacAACAGTACTAATTAGTGAATTATAAGCTCCAAATacatgttagctacattagcctcacagCTCAAGAGATAATTTGTGATGTAGAAGCTTCCTCTAATTTTTCGCTAGTTATATTATCTTTATAGCACCAACACTAATGCGGTGAGGTATACGCTAACACTTTTTAGCTagttgttagctacattagcctcacagCTCAAGAGATAATTTGTGATGTACCAAATCATACTTGCCTGTAGGTGCagtaaaaatggagatacaagtttttttttttttgtgaaattgaTTATAAGTATCTTGTGTCTTTACCACTAAGAATCTTCCGACAGTGATGAAGCTGTGCCAATGTTTCCCATCTCTCCTGAAATCCCTACACAGTTTTAACTTCACTCCAAAACCTAAAGAGTTACAATAACCAAGAAAGGATTTTCCATGTTTTCATTTTGGGATTTACTCTGTACTGAATCAAATAAAGCATGATAAAGAaaaa
>TU247237
AGGAGAGTTTGAGCCTGGATTCATCGCTTTCAGAGTTTTCAACAACGAGAGGGCGGCCATGGCCATCTGCTCTGGAGTCAGACCGACCGGCTGCAATACAGAACATTACTGTATTGGGGGAGGAGGGCATTTCCCGGAAGCGGCACCGAGACAGTGTGGAGATTTTGCCGGTTTTGACTGGAACGGCTACGGGACAAATGCAGATTGGAGTGCCTCCAAAACGATCACTGAGGCTGCTGTGTTTCTATTTTACCGCTGAAATTCAGAGCACACACTCACCTCTATCACTGTTTATCTTTCTTTATAATTCATTTAACCGAATATACAGTAAGATCATTTCTAAATAAGAAACAGTAACTCTTACACTGATTATACCGACAATcctctccaaaagtattggaacagtgaggacAATCTCTTTAATTATACTGTAGACCGACAACATTTGGGTTTTCATGATAAAACAATGAATATGAGATTAAAAAGTATTAGAACACTTTCAGCTGGTTAATGTTTTGGGGGGTAAAATGCATGCTTTATAGGGTTTAAGTCTGGAGATGGACTAGGCCAGTCTAAAACCGTCCACTTCCacttacttagtacaccagtgacgactttcttctttcttcagaACATTCCAAACGATTGTACTGactatggacaatatttgtgcaatgTCTCCGATTGCTTTTTAGAATTTACTCTACAGGTTCTTTAGCCGTTGACagttctctgtttttttatgttggttgCTGTCTTTTATAAATACctgttaataaacaaaaaacaaacaaa

Function

NR:

description
PREDICTED: intelectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247233 True 1696 lncRNA 0.36 4 4478301 4480987
TU247237 False 795 lncRNA 0.40 3 4478301 4506708

Neighbor

gene id symbol gene type direction distance location
sclt1 sclt1 coding upstream 55263 4395815 ~ 4423038 (+)
pcdh18 LOC108413018 coding upstream 650536 3815403 ~ 3827765 (+)
LOC103037959 NA coding upstream 927776 3536363 ~ 3550525 (+)
LOC103037633 NA coding upstream 943249 3524196 ~ 3535052 (+)
LOC103038692 acsl1,acsl1a,LOC107562746,LOC107702334 coding upstream 1041257 3399191 ~ 3437044 (+)
LOC103029042 chic2,LOC103029042,LOC108441324,LOC103353160,LOC101486940,LOC106602128 coding downstream 435713 4942421 ~ 4948100 (+)
LOC103030219 tsn5,tspan5b,LOC108441323,LOC107557938,LOC107692617,LOC107758863,LOC105893813,LOC103360687 coding downstream 464396 4971104 ~ 4981396 (+)
LOC103028516 slc24a2,LOC103028516,LOC108441320,LOC108260852,LOC107665969 coding downstream 489069 4995777 ~ 5031681 (+)
LOC103028729 LOC108415759 coding downstream 573690 5080398 ~ 5105339 (+)
mttp mttp,mtp,zgc:136353 coding downstream 609809 5116517 ~ 5140276 (+)
G182600 hgsnat,LOC108411545 non-coding upstream 25269 4448681 ~ 4453032 (+)
G182597 hgsnat,LOC108411545,LOC107656620,LOC107565475 non-coding upstream 35654 4437984 ~ 4442647 (+)
G182591 NA non-coding upstream 41133 4436553 ~ 4437168 (+)
G182592 NA non-coding upstream 85923 4376381 ~ 4392378 (+)
G182566 NA non-coding upstream 319499 4158360 ~ 4158802 (+)
G182606 NA non-coding downstream 7045 4513753 ~ 4514215 (+)
G182607 NA non-coding downstream 7579 4514287 ~ 4514859 (+)
G182673 NA non-coding downstream 343879 4850587 ~ 4851443 (+)
G182674 NA non-coding downstream 344795 4851503 ~ 4852061 (+)
G182690 NA non-coding downstream 379028 4885736 ~ 4889343 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other upstream 46355 4369917 ~ 4431946 (+)
G182361 NA other upstream 1188043 3287938 ~ 3290258 (+)
G182356 NA other upstream 1219451 3256367 ~ 3258850 (+)
LOC111195173 NA other upstream 1909007 2525683 ~ 2569294 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 2017629 2457564 ~ 2460672 (+)
LOC103029349 NA other downstream 428875 4935583 ~ 4941134 (+)
G182790 NA other downstream 920159 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 1535980 6042688 ~ 6048474 (+)
pax5 pax5 other downstream 1744066 6250774 ~ 6367190 (+)
rnf38 rnf38,LOC107551561 other downstream 1938555 6445263 ~ 6498192 (+)

Expression


Co-expression Network