rnf38 (rnf38,LOC107551561)


Basic Information

Item Value
gene id rnf38
gene name rnf38,LOC107551561
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6445263 ~ 6498192 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU247933
ATATTGCAGTTAAGAAATGGTTGAAACATGTTCATTATTGCTTTATTAAAGAATCCCTGTTCttaagctctgtctctgtgtttgcgtgtgttcgcaggtgtgtggtgtgtatgtgtgactTTGAGTCTCGTCAGCTGCTGCGAGTTCTGCCCTGCAATCATGAGTTCCATGCCAAGTGTGTCGACAAGTGGCTCAAGGCTAACAGAACCTGCCCTATCTGCCGAGCAGACGCCTCCGAAGTCCAGCGGGATTCCGAGTGATGATCCCGGCCCGCTTCCCGCTCATAGACGTGCGCACACACCCCTGTACACACCACTGTTTTCACCACAGGATCACATTGCCCTGTGCAGCCAGCTGGACTCCAGAACTTGTCAAATCTTTCCACACACTGGACTTTTCACCCCATCTCCTGTTGCATCGAGTtcttttgatatatatatatatatataagacagacacacactcctacaacacacacacattctctctctctctcatacacacacaatacatacaaacacatgtatacaaacacagacagacacgccCCTTTCAAAACTCTTCTAATGCTTCTGTGACGAGCTTCCTTCTTTTGTGCTGTGCTGAGAAACAACTGAACAAGCACAagtacgtacactctctctctgaagtcACCTCTACACATCTCCAGTTACAATGGTTACTAACGCCATGAGTCCAAAGATTCCAATGGTTCATATGTTTTGTCTGGATTAGGTCACTCCAACCACTGCcattactgtttattacttattaatttaattgtattttttgttttattgttatttttttgtttttttttgtttttttttttttttttttttttttatttttttttatgggttttaatttgttttccattaaaaatacaattgtATCATTTaacatgatgtagtttcataTGTATAATATCTGTAACCAAAATCATTTGAAGGCTTGATATAAAattttttaacaaacatttgtacattt
>XM_022681752.1
gtgtgtgattGCTGAGGTCTGGGCTCGGTGTGAATGTGAAGGAGTCCCGCTGATGGTTTTGTCACATTTTCTCACCGTCTGAAGCTGCGGGGCGTTCGGGCGCTGAAAACATCCACCATATCCACCTTAAATCCGCCTTAAACGCGTTCACCACACTCGCTCCGCCGGTGGAGTAGCAGGGAGCGGCTGCGGGGCTCAGCTGAGCGGTTTTTACTTCATCCGAGTGCTTCCCCCCTGTTCTTCTGGCTGGAAAACGGACGTTAAAAGTAGAGAAGCCTCCCCCTCCCCATCCCCCACGTGAAGGAAATGCCCATCGCAGCCACCGGTCAACCATCGACTCCAGAGCCTCGCGTCTGCTCACAGTTGCCCAGCGGTGCCGAGCCCACGCCCAAGAGGGTCGGCCTCTGTGAGGACGCCGAGGTGAGGGGACACAGCGGTGGACCCCTGGAACCAGGCAGGGCCACTCTAGGAGCCTcagcggcggcggcagcagTGGAAGCGTCACATTCTCCTCCGGCTCTCTCGCCGCTTGCTTTGTCTTTGCACGGCCACCCTGAGCCGCCCAGGACTCGCTCGCGCTCTCGCTCCGGATTCTACGGACCTAACGGAGCAGTGGGAGTGACCCATCATCCTTATCCTTACCattatcatcttcatcatcctcatcagccgcagcagcagcagctacagcagcAACACGGACATATGGAAAACCTAAGGCCTCACGGGAGCATTCTGTCGCCGGGCGGCCACAGGCACTCCGGCCCCGGAGCTCACCGGAACACCGGAGCAGgAGCGATGGGAGGAGTGTATCACTACCATTCGGAGCCGGCCTGCGCCGATGCCACTGATAAGACGGAGGACTCCCCGAGTCCGAAACGCCAGCGTCTGTCCCAGCAGTCTGTACTGGAGCTCACCTCAGCCCCTCCCTCCACACCTTCTCCACCAATCAGACCGTGGGAGCTGCCGCCGAGTCGAAGACCGCACCCCTACCCTCACACACCCTACCACTCAGAACGCTGTCACACGCCTGCACGACACAGACGCAGCCCTCCAGCTCGTCGGCAAAGGGGACGCCGCGATCGTATGACTCGACTCCACCCACCTCACCCTCCCCACCACGGCTCGCCGGGCGGCGGTCAGGACGAAAACTACCGCCACCCTCACCACCCACACTCCCTCCATCCGTACGGCCAGGCGCCCCCTCACCCTCCAACCGGCCTGGACGAGCCCCGCGCCTTCCACCCCCCCACACTGTCCCCACGGCTGCTGCACCCACAGCAACAGGGCACCATGGTGATGGACCTCCATGAGCAGCTCCCTCAGGGAACAGTCCCGGTATCGTATACTGTTTCCCCGGTGCCGCCCCACGGCCTCCCCCCACCGCTCTGCACGGGGCAGCATCTCCCAGCATGCTCCTCTCAACAGCAGGTGCCTGCCTGCTCCGTCGTCTTCAGCGGCCAGCAACACTATCCAGTCTGCAGTGTCCCCCCTCCGatgttACCTGCGTGCTCAGTGCAGCACTTGCCAGTTCCGTACGCATTTCCGTCTCTTCTCTCCAGTGATCCCGCGTTTCTACTTCATCCTCCACACCTCTCGCATCACCCACCCCATCTGCCCCCGCCCGGACAGTTCCTGCCCTTCCAGACTCAACAGTCCCGATCGccaCTACAAAGGATTGAGAATGAAGTGGAGCTGCTAGGGGATCATCTTTCTGTGGCGGGCAGCTTTAATTACCCCCACTCGGGCCACCCCAGCCCCTTGCCACCCTCCACCCCGCTGCAGTTCCTCTCTCATGAACCCCTGCCCCAGGAGCTCTTTGGAGTGCCGTATCCTCACTTCATGCCTCGGCGAATCACAGGCCGGCGTTATCGCTCACAGCAAGCTGTGCCCCCGCCCCCGTATCACCCCAGCCTGCTGCCCTACTTCCTGTCTGTTCTTCCAGTGCAGCCCACAGCCGTGGGTCCTGCCATCAGCTTAGAGCTGGACGTAGATGATGGAGAAGTGGAGAATTACGAGGCTCTGTTGAACCTGGCCGAGCGTCTTGGGGAAGCCAAACCACGTGGTCTGACTAAAGCTGATATAGAACAGCTGCCTTCCTACAGATTCAACCCCAGCAATCACCAGTCTGAGCGACCCTgtgtgtggtgtgtatgtgtgactTTGAGTCTCGTCAGCTGCTGCGAGTTCTGCCCTGCAATCATGAGTTCCATGCCAAGTGTGTCGACAAGTGGCTCAAGGCTAACAGAACCTGCCCTATCTGCCGAGCAGACGCCTCCGAAGTCCAGCGGGATTCCGAGTGATGATCCCGGCCCGCTTCCCGCTCATAGACGTGCGCACACACCCCTGTACACACCACTGTTTTCACCACAGGATCACATTGCCCTGTGCAGCCAGCTGGACTCCAGAACTTGTCAAATCTTTCCACACACTGGACTTTTCACCCCATCTCCTGTTGCATCGAGTtcttttgatatatatatatatatataagacagacacacactcctacaacacacacacattctctctctctctcatacacacacaatacatacaaacacatgtatacaaacacagacagacacgccCCTTTCAAAACTCTTCTAATGCTTCTGTGACGAGCTTCCTTCTTTTGTGCTGTGCTGAGAAACAACTGAACAAGCACAagtacgtacacacacacacgaacacacacacacacacacacacacac
>XM_022681753.1
ttctctgtgtgtgattGCTGAGGTCTGGGCTCGGTGTGAATGTGAAGGAGTCCCGCTGATGGTTTTGTCACATTTTCTCACCGTCTGAAGCTGCGGGGCGTTCGGGCGCTGAAAACATCCACCATATCCACCTTAAATCCGCCTTAAACGCGTTCACCACACTCGCTCCGCCGGTGGAGTAGCAGGGAGCGGCTGCGGGGCTCAGCTGAGCGGTTTTTACTTCATCCGAGTGCTTCCCCCCTGTTCTTCTGGCTGGAAAACGGACGTTAAAAGTAGAGAAGCCTCCCCCTCCCCATCCCCCACGTGAAGGAAATGCCCATCGCAGCCACCGGTCAACCATCGACTCCAGAGCCTCGCGTCTGCTCACAGTTGCCCAGCGGTGCCGAGCCCACGCCCAAGAGGGTCGGCCTCTGTGAGGACGCCGAGGTGAGGGGACACAGCGGTGGACCCCTGGAACCAGGCAGGGCCACTCTAGGAGCCTcagcggcggcggcagcagTGGAAGCGTCACATTCTCCTCCGGCTCTCTCGCCGCTTGCTTTGTCTTTGCACGGCCACCCTGAGCCGCCCAGGACTCGCTCGCGCTCTCGCTCCGGATTCTACGGACCTAACGGAGCAGTGGGAGTGACCCATCATCCTTATCCTTACCattatcatcttcatcatcctcatcagccgcagcagcagcagctacagcagcAACACGGACATATGGAAAACCTAAGGCCTCACGGGAGCATTCTGTCGCCGGGCGGCCACAGGCACTCCGGCCCCGGAGCTCACCGGAACACCGGAGCAGgAGCGATGGGAGGAGTGTATCACTACCATTCGGAGCCGGCCTGCGCCGATGCCACTGATAAGACGGAGGACTCCCCGAGTCCGAAACGCCAGCGTCTGTCCCAGCAGTCTGTACTGGAGCTCACCTCAGCCCCTCCCTCCACACCTTCTCCACCAATCAGACCGTGGGAGCTGCCGCCGAGTCGAAGACCGCACCCCTACCCTCACACACCCTACCACTCAGAACGCTGTCACACGCCTGCACGACACAGACGCAGCCCTCCAGCTCGTCGGCAAAGGGGACGCCGCGATCGTATGACTCGACTCCACCCACCTCACCCTCCCCACCACGGCTCGCCGGGCGGCGGTCAGGACGAAAACTACCGCCACCCTCACCACCCACACTCCCTCCATCCGTACGGCCAGGCGCCCCCTCACCCTCCAACCGGCCTGGACGAGCCCCGCGCCTTCCACCCCCCCACACTGTCCCCACGGCTGCTGCACCCACAGCAACAGGGCACCATGGTGATGGACCTCCATGAGCAGCTCCCTCAGGGAACAGTCCCGGTATCGTATACTGTTTCCCCGGTGCCGCCCCACGGCCTCCCCCCACCGCTCTGCACGGGGCAGCATCTCCCAGCATGCTCCTCTCAACAGCAGGTGCCTGCCTGCTCCGTCGTCTTCAGCGGCCAGCAACACTATCCAGTCTGCAGTGTCCCCCCTCCGatgttACCTGCGTGCTCAGTGCAGCACTTGCCAGTTCCGTACGCATTTCCGTCTCTTCTCTCCAGTGATCCCGCGTTTCTACTTCATCCTCCACACCTCTCGCATCACCCACCCCATCTGCCCCCGCCCGGACAGTTCCTGCCCTTCCAGACTCAACAGTCCCGATCGccaCTACAAAGGATTGAGAATGAAGTGGAGCTGCTAGGGGATCATCTTTCTGTGGCGGGCAGCTTTAATTACCCCCACTCGGGCCACCCCAGCCCCTTGCCACCCTCCACCCCGCTGCAGTTCCTCTCTCATGAACCCCTGCCCCAGGAGCTCTTTGGAGTGCCGTATCCTCACTTCATGCCTCGGCGAATCACAGGCCGGCGTTATCGCTCACAGCAAGCTGTGCCCCCGCCCCCGTATCACCCCAGCCTGCTGCCCTACTTCCTGTCTGTTCTTCCAGTGCAGCCCACAGCCGTGGGTCCTGCCATCAGCTTAGAGCTGGACGTAGATGATGGAGAAGTGGAGAATTACGAGGCTCTGTTGAACCTGGCCGAGCGTCTTGGGGAAGCCAAACCACGTGGTCTGACTAAAGCTGATATAGAACAGCTGCCTTCCTACAGATTCAACCCCAGCAATCACCAGTCTGAGCGACCCTGTGAgtgtgtggtgtgtatgtgtgactTTGAGTCTCGTCAGCTGCTGCGAGTTCTGCCCTGCAATCATGAGTTCCATGCCAAGTGTGTCGACAAGTGGCTCAAGGCTAACAGAACCTGCCCTATCTGCCGAGCAGACGCCTCCGAAGTCCAGCGGGATTCCGAGTGA

Function

symbol description
rnf38 Predicted to enable metal ion binding activity. Orthologous to human RNF38 (ring finger protein 38).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF38-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247933 False 990 TUCP 0.39 5 6493662 6498192
XM_022681752.1 True 2716 mRNA 0.59 13 6445269 6494487
XM_022681753.1 False 2313 mRNA 0.61 13 6445263 6494074

Neighbor

gene id symbol gene type direction distance location
LOC103028415 NA coding upstream 319479 6101885 ~ 6125784 (+)
trnap-agg_6 NA coding upstream 599761 5845431 ~ 5845502 (+)
LOC111195263 LOC108425226 coding upstream 724795 5718040 ~ 5720468 (+)
LOC111195187 cyp4v8,LOC108415372,LOC107656409,LOC107754133,LOC107562739,LOC106602559 coding upstream 1030282 5398879 ~ 5414981 (+)
LOC111195186 NA coding upstream 1069199 5367516 ~ 5376064 (+)
LOC111195264 NA coding downstream 53061 6551253 ~ 6564327 (+)
LOC111195195 NA coding downstream 112397 6610589 ~ 6618713 (+)
LOC111195266 NA coding downstream 142355 6640547 ~ 6642395 (+)
LOC103027465 chrnb2a,LOC108412405,LOC107656869,LOC107548317,LOC107562601,LOC107702400 coding downstream 206685 6704877 ~ 6732876 (+)
LOC103022127 chrna6,LOC108412407,LOC107655806,LOC107709456,LOC107750436 coding downstream 274379 6772571 ~ 6813525 (+)
G183081 NA non-coding upstream 28526 6416342 ~ 6416737 (+)
G183062 NA non-coding upstream 35715 6314663 ~ 6409548 (+)
G183078 melk,LOC107750464 non-coding upstream 41461 6396041 ~ 6403802 (+)
G183076 melk,LOC107750464 non-coding upstream 53999 6380761 ~ 6391264 (+)
G183065 NA non-coding upstream 85508 6346121 ~ 6359755 (+)
G183097 NA non-coding downstream 11119 6509311 ~ 6511064 (+)
G183099 NA non-coding downstream 31749 6529941 ~ 6530381 (+)
LOC111195198 NA non-coding downstream 41287 6539479 ~ 6550909 (+)
G183199 NA non-coding downstream 588768 7086960 ~ 7088091 (+)
G183201 NA non-coding downstream 596517 7094709 ~ 7095233 (+)
pax5 pax5 other upstream 78073 6250774 ~ 6367190 (+)
G183001 pgm2 other upstream 396789 6042688 ~ 6048474 (+)
G182790 NA other upstream 1018008 5426867 ~ 5427255 (+)
LOC103029349 NA other upstream 1504129 4935583 ~ 4941134 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other upstream 2013317 4369917 ~ 4431946 (+)
LOC103036850 NA other downstream 25021 6523213 ~ 6664763 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other downstream 399288 6897480 ~ 7009923 (+)
G183215 NA other downstream 716279 7214471 ~ 7217139 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other downstream 2372645 8870837 ~ 8983969 (+)
G183387 NA other downstream 2713142 9211334 ~ 9293703 (+)

Expression


Co-expression Network