G183209


Basic Information

Item Value
gene id G183209
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7112948 ~ 7115091 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248129
CTGAAGCTGAAAGCGTCGTATTTGTTGGATGATTTGGGGACTGCAGACGTCATGTACAGGAAGCCCAGGTGAGGGTTGTTCCGGATGACCTGCAGGATTTCAGCAGTGGAGCGAATCTGAGCATGGATCACTTCCTCTACAGAGCTGAAAAGCAGCGGATTGGGCAGGGGTAGAGAGGGGGCGTGGATAATGGGAGCCAATGTGACGCTGCGGCCTCTGGTGGAGCTCTTTGGTATTTTGGGTGAAGAGGAAGAGCTGAGCATGCCCTGGGTGAACTGGACTGTCTCTCTTTAAGGTGGTCAGGTATGCGGGGGAGTTGGACAGTCCACTCGGCCCCTTCAGAGaaagaggggcggggcttccaaCCAGCACTGATCAGCTCCTCCCTGTTCTTCCTCTGAATGGACTCCGGCTGGTTACGCTCCTGATATTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248129 True 435 lncRNA 0.55 2 7112948 7115091

Neighbor

gene id symbol gene type direction distance location
LOC103031277 chrnb3a,LOC108410818,LOC107562617,LOC107702298,LOC107750476,LOC107655822,LOC107548357 coding upstream 234627 6851222 ~ 6878321 (+)
LOC103022127 chrna6,LOC108412407,LOC107655806,LOC107709456,LOC107750436 coding upstream 299423 6772571 ~ 6813525 (+)
LOC103027465 chrnb2a,LOC108412405,LOC107656869,LOC107548317,LOC107562601,LOC107702400 coding upstream 380072 6704877 ~ 6732876 (+)
LOC111195266 NA coding upstream 470553 6640547 ~ 6642395 (+)
LOC111195195 NA coding upstream 494235 6610589 ~ 6618713 (+)
primpol NA coding downstream 344838 7459929 ~ 7478267 (+)
LOC111195272 NA coding downstream 397606 7512697 ~ 7514718 (+)
LOC103036243 LOC108439191 coding downstream 1512263 8627354 ~ 8739863 (+)
klhl2 klhl2,LOC107655955,LOC107745059,LOC107591556,LOC107702385 coding downstream 1637036 8752127 ~ 8778943 (+)
msmo1 msmo1,LOC107750426,LOC107702386,LOC107655978 coding downstream 1669789 8784880 ~ 8793907 (+)
G183201 NA non-coding upstream 17715 7094709 ~ 7095233 (+)
G183199 NA non-coding upstream 24857 7086960 ~ 7088091 (+)
LOC111195198 NA non-coding upstream 562039 6539479 ~ 6550909 (+)
G183099 NA non-coding upstream 582567 6529941 ~ 6530381 (+)
G183097 NA non-coding upstream 601884 6509311 ~ 6511064 (+)
G183221 NA non-coding downstream 63091 7178182 ~ 7179146 (+)
G183207 LOC108443989,LOC108260977,LOC105904014,LOC105891541 non-coding downstream 75791 7190882 ~ 7201991 (+)
G183216 gria2a non-coding downstream 104110 7219201 ~ 7222512 (+)
G183236 NA non-coding downstream 193061 7308152 ~ 7309411 (+)
G183241 NA non-coding downstream 232385 7347476 ~ 7400596 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 103025 6897480 ~ 7009923 (+)
LOC103036850 NA other upstream 448185 6523213 ~ 6664763 (+)
rnf38 rnf38,LOC107551561 other upstream 614756 6445263 ~ 6498192 (+)
pax5 pax5 other upstream 745758 6250774 ~ 6367190 (+)
G183001 pgm2 other upstream 1064474 6042688 ~ 6048474 (+)
G183215 NA other downstream 99380 7214471 ~ 7217139 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other downstream 1755746 8870837 ~ 8983969 (+)
G183387 NA other downstream 2096243 9211334 ~ 9293703 (+)
LOC111195202 NA other downstream 2723845 9838936 ~ 9844659 (+)
LOC111195140 NA other downstream 2949761 10064852 ~ 10072047 (+)

Expression


Co-expression Network