G183215


Basic Information

Item Value
gene id G183215
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7214471 ~ 7217139 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248136
CAAGGATCGAATCCTTTGCTTTCtgtggaggaagagaagaaagacGAGGCTGACGGCAGTTTCTCAGCCTCTGTTtattccaaaagtccaaaaaataaagcagttgATCCACATTCCAATTACAAAAGTCTCCTCCGGTTCGGCTCTGTCGGCTCTCCGAACGAAAATCTAGTGAAGGTTCAAGTccgttggtgtgtgtttgtgtgtgtttgtgtataaactattgtgtgtgcatatatatatatatatatatagtgtgtgtgtatatatatatgtgtgtctgtgtggaagTTCTCACGACCACCGTCTTCCACTCTCGAACCGTCCTTGAACCACGTGAACCATGTGTCCGTACAATTAGAAGATTTAAGTTATACATGGACGATCTGCttggtatatatatacagtacatatacatAGAAAACTAATGGACAAGATTGCAGTTACACAGCATGGCATAGAAAAGGGTGCTCGGCATAGAGTTTCAATCTTTCAATCGTTAAGACTTATTAAtccttattaataatataatatctgTAATTAATatactctcatttttttttaggtcatattGGACTATGGGAATTCTATCAAATCAATCGTCTAATCATCTAAAGTCATTAAGAAGTGGCATTAATCATTATCAGAATAATCAGAATCATAATCAGAATCATAATCATATACTCATCatcgcttaaaaaaaaaaacaaagattcaAACTAAAGGTTCTCATGCGTTTCACAGTTAAAGACTGCATATAGTAGTGCACATCATTTAATGTACATGTTAATTAATGACACAGAAGAAATGAACGCAAAtcgaaagaaataaaaacacttagagAAGATTTAGAAAAGAGATACGTCTCACTCGCGCACACGCGATCATAAGCATATATATACTCAAATCTGAACCTTCCAAAGACCccctgaaagaaagaaaaaagaaagaaaaaaagaaaggaaacaaTGTAAAAGTCTAATAATTCAGAGTTCAGTATAAGtgggttttttttaaagtcatttttaagtctttttttttttttgttgtagtttCCGTTGTTTTGCTCGTCGtttgttcatttctttttcGAAGACAGAACTACAAAACTACGGCTTGCATCGTCCATACGCTAGACAAAAGGAACAAGAACGGAACGGAAcgacaaaattacaaaattaacgCTTCACGTTTCAACAACTCATAAACCGAATCCGAAACAAAAAAACGCTTAGTCAACGAAAAGGAAAAAAtccaaagtatatatatatatatatattgttttttttattttttctcgtTTCTTcgtttctttttgtctcttttttttttcctggtcaAGCATCGTATCTTGTGTCTTCATCGTCATCGTATTAACATTGAGAACATCAAAAGAACGATCAAAAGTGAAGTTATTAGTTATTTACATGAtcaatatctatattttattttattcttctttttctttagtATGCGATTCTCTCGTGATTTCGTACAATGGTTGCGTAAATGATTCGGTccaaacgtaaaaaaaaaaaaagaaaaataatggtTTGATGTAATTCACTTGAtatgaaaccttttttttgttttgtttttttaatgttttttaactcATTTGGCTTtgaaacgtgtttttttttttctttaaaccaGAGCAAATCCGTGAATtcgtacttttttttttttacacgatGTGGAAGCAGTTTCTAGTTTCTTCGCTGTCGtccttcttcttgttcttcttcttttttttttcttcttttgaagtgttttataaaatgatttaaatcattttttctcgtttttttaTCCTCGGAGTGAAAcggaatgagaaagaaagagagagaacggaTCCCGTTTGATGATTCAGTGATGATTCAAGTGTGCTTTGTGGTTCTTCGGAATCGAGAGATTCCAAAAAACGTGTTGCTATGGAAACAGATGTTGAGCTGCTCCTCGGTGCGCTCGGTTTGCGAGTCCTCTCGGCTTCTCTTCTTCGgtgcgcaaaaaaaaaaaaaagaaaaaactgaagGATGGaggtgtggaagtgtgtgtgactttgtgtgtgtgtgtggaagtgtgtgtgtgtgtgtggtacaacagcgtgcatgtgtgtgtgtatgtgtgtatgtaaacCGATATGCATGTGTAAACCCAAAGTTCATGGTAAACGTCCAAAGGTTTCTGTACATTTTtcagtatgtatgtgtgtgtgtgtttgtgtttgtttttgtgtatgtACAAGGACTTTgcaaatgtatgtgtgtattgtatagACAGGATATCTATGCATTTTTGCGTGTGTatgtatctatttatatatatgtatgtatataggtATAAATGGGTCTGTACAGCCAAGTACAGCCACTGTGTGTTTCCTGTGTGCGTCTGAGTGtgcgttttttgttgtttgcagGTAAAAGAACgtgtataattgtgtgtgtaggtgtgtgtaagtgtgtgtgtaaggcacTCAGGACAGCTCGCTCATGTTGAGAGGCATTGCCATGCCTGGTCTCATGTAGGGCACAGCGTGGACGGCTTTAGAGAAATCTGGAGTCAGCACTCTACCGTTTTCCCCCGTACTGCCAGTTATAGACAACCTGGCCTTGCTGCGCATGGCGTCCGTGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248136 True 2639 TUCP 0.36 2 7214471 7217139

Neighbor

gene id symbol gene type direction distance location
LOC103031277 chrnb3a,LOC108410818,LOC107562617,LOC107702298,LOC107750476,LOC107655822,LOC107548357 coding upstream 336150 6851222 ~ 6878321 (+)
LOC103022127 chrna6,LOC108412407,LOC107655806,LOC107709456,LOC107750436 coding upstream 400946 6772571 ~ 6813525 (+)
LOC103027465 chrnb2a,LOC108412405,LOC107656869,LOC107548317,LOC107562601,LOC107702400 coding upstream 481595 6704877 ~ 6732876 (+)
LOC111195266 NA coding upstream 572076 6640547 ~ 6642395 (+)
LOC111195195 NA coding upstream 595758 6610589 ~ 6618713 (+)
primpol NA coding downstream 242790 7459929 ~ 7478267 (+)
LOC111195272 NA coding downstream 295558 7512697 ~ 7514718 (+)
LOC103036243 LOC108439191 coding downstream 1410215 8627354 ~ 8739863 (+)
klhl2 klhl2,LOC107655955,LOC107745059,LOC107591556,LOC107702385 coding downstream 1534988 8752127 ~ 8778943 (+)
msmo1 msmo1,LOC107750426,LOC107702386,LOC107655978 coding downstream 1567741 8784880 ~ 8793907 (+)
G183207 LOC108443989,LOC108260977,LOC105904014,LOC105891541 non-coding upstream 12480 7190882 ~ 7201991 (+)
G183221 NA non-coding upstream 35325 7178182 ~ 7179146 (+)
G183209 NA non-coding upstream 99380 7112948 ~ 7115091 (+)
G183201 NA non-coding upstream 119238 7094709 ~ 7095233 (+)
G183199 NA non-coding upstream 126380 7086960 ~ 7088091 (+)
G183216 gria2a non-coding downstream 2062 7219201 ~ 7222512 (+)
G183236 NA non-coding downstream 91013 7308152 ~ 7309411 (+)
G183241 NA non-coding downstream 130337 7347476 ~ 7400596 (+)
G183248 wdr19,LOC107591558 non-coding downstream 177291 7394430 ~ 7397384 (+)
G183251 wdr19 non-coding downstream 194658 7411797 ~ 7417030 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 204548 6897480 ~ 7009923 (+)
LOC103036850 NA other upstream 549708 6523213 ~ 6664763 (+)
rnf38 rnf38,LOC107551561 other upstream 716279 6445263 ~ 6498192 (+)
pax5 pax5 other upstream 847281 6250774 ~ 6367190 (+)
G183001 pgm2 other upstream 1165997 6042688 ~ 6048474 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other downstream 1653698 8870837 ~ 8983969 (+)
G183387 NA other downstream 1994195 9211334 ~ 9293703 (+)
LOC111195202 NA other downstream 2621797 9838936 ~ 9844659 (+)
LOC111195140 NA other downstream 2847713 10064852 ~ 10072047 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other downstream 2881407 10098546 ~ 10101547 (+)

Expression


Co-expression Network