G183236


Basic Information

Item Value
gene id G183236
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7308152 ~ 7309411 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248161
TTTGTTGGTGATGAAGGAAGGTGTTTAATGCATGGCAGAGATTTAGCAGCTGTGGTTCGCAACGTACACACACCCAtacgaaacacacacacacacacacacacacagtatctgATTCATGGCTCCTCGGCTTAACCAGCTCAGCAGAGGCTACAGACAGAGTTAATAAAAGCACAGAAACGCACAGTCTGCGCTTTAGGATGTAGGGTACCATCATTCAGATGGGCAGAGAATAGATATAGCttaacacactttaaaaaaggGGGTCTCctgctttcacacacacacacacacacacaacacacacatatatatatatatatagacagatagacaaagGATAGGATGGTCTAGATGTAGAGATGTCATTTACATAGTCACCACAGGcctcacattttctgcaaagtcATGCTGTCCAAAGaacaccccaaaaaaaaaaaaaaaaccgtaaaatttcactttaaaattaaggaatattttttgcatttcattCAGGACATAATGGCACGCAACAGTCTTTAAAGCCTGGAAGCTCAAGCAGCTACTTAAGAAcagtgcaacaaaaaaaaccccgGGAAAAAGTCCTTATTACGTGTTATCACGTCAAATGCGTCCGACATGGGAAAGAAAACGGGAGTTTTTGCACTTTTCCTACATGCTGGGATCCTTTTCCTCGCAGTCATGCAtgttcacactcacacactgcagggAGGTATTGATTTTTATCGATGTGTAGAATTCACCGACGGATCGTAGACGCATCAGTCTGGAGGTAGGAACAGAACTGCATCGATTTTGGAATGTAAT
>TU248162
TTTGTTGGTGATGAAGGAAGGTGTTTAATGCATGGCAGAGATTTAGCAGCTGTGGTTCGCAACGTACACACACCCAtacgaaacacacacacacacacacacacacagtatctgATTCATGGCTCCTCGGCTTAACCAGCTCAGCAGAGGCTACAGACAGAGTTAATAAAAGCACAGAAACGCACAGTCTGCGCTTTAGGATGTAGGGTACCATCATTCAGATGGGCAGAGAATAGATATAGCttaacacactttaaaaaaggGGGTCTCctgctttcacacacacacacacacacacaacacacacatatatatatatatatagacagatagacaaagGATAGGATGGTCTAGATGTAGAGATGTCATTTACATAGTCACCACAGGcctcacattttctgcaaagtcATGCTGTCCAAAGaacaccccaaaaaaaaaaaaaaaaccgtaaaatttcactttaaaattaaggaatattttttgcatttcattCAGGACATAATGGCACGCAACAGTCTTTAAAGCCTGGAAGCTCAAGCAGCTACTTAAGAAcagtgcaacaaaaaaaaccccgGGAAAAAGTCCTTATTACGTGTTATCACGTCAAATGCGTCCGACATGGGAAAGAAAACGGGAGTTTTTGCACTTTTCCTACATGCTGGGATCCTTTTCCTCGCAGTCATGCAtgttcacactcacacactgcagggAGGTATTGATTTTTATCGATGTGTAGAATTCACCGACGGATCGTAGACGCATCAGTCTGGAGGTAGGAACAGAACTGCATCGATTTTGGAATGTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248161 True 807 lncRNA 0.42 2 7308152 7309411
TU248162 False 807 lncRNA 0.42 2 7308152 7309411

Neighbor

gene id symbol gene type direction distance location
LOC103031277 chrnb3a,LOC108410818,LOC107562617,LOC107702298,LOC107750476,LOC107655822,LOC107548357 coding upstream 429831 6851222 ~ 6878321 (+)
LOC103022127 chrna6,LOC108412407,LOC107655806,LOC107709456,LOC107750436 coding upstream 494627 6772571 ~ 6813525 (+)
LOC103027465 chrnb2a,LOC108412405,LOC107656869,LOC107548317,LOC107562601,LOC107702400 coding upstream 575276 6704877 ~ 6732876 (+)
LOC111195266 NA coding upstream 665757 6640547 ~ 6642395 (+)
LOC111195195 NA coding upstream 689439 6610589 ~ 6618713 (+)
primpol NA coding downstream 150518 7459929 ~ 7478267 (+)
LOC111195272 NA coding downstream 203286 7512697 ~ 7514718 (+)
LOC103036243 LOC108439191 coding downstream 1317943 8627354 ~ 8739863 (+)
klhl2 klhl2,LOC107655955,LOC107745059,LOC107591556,LOC107702385 coding downstream 1442716 8752127 ~ 8778943 (+)
msmo1 msmo1,LOC107750426,LOC107702386,LOC107655978 coding downstream 1475469 8784880 ~ 8793907 (+)
G183216 gria2a non-coding upstream 85640 7219201 ~ 7222512 (+)
G183207 LOC108443989,LOC108260977,LOC105904014,LOC105891541 non-coding upstream 106161 7190882 ~ 7201991 (+)
G183221 NA non-coding upstream 129006 7178182 ~ 7179146 (+)
G183209 NA non-coding upstream 193061 7112948 ~ 7115091 (+)
G183201 NA non-coding upstream 212919 7094709 ~ 7095233 (+)
G183241 NA non-coding downstream 38065 7347476 ~ 7400596 (+)
G183248 wdr19,LOC107591558 non-coding downstream 85019 7394430 ~ 7397384 (+)
G183251 wdr19 non-coding downstream 102386 7411797 ~ 7417030 (+)
G183289 ncapd3 non-coding downstream 124567 7433978 ~ 7458704 (+)
G183293 NA non-coding downstream 170974 7480385 ~ 7499482 (+)
G183215 NA other upstream 91013 7214471 ~ 7217139 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 298229 6897480 ~ 7009923 (+)
LOC103036850 NA other upstream 643389 6523213 ~ 6664763 (+)
rnf38 rnf38,LOC107551561 other upstream 809960 6445263 ~ 6498192 (+)
pax5 pax5 other upstream 940962 6250774 ~ 6367190 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other downstream 1561426 8870837 ~ 8983969 (+)
G183387 NA other downstream 1901923 9211334 ~ 9293703 (+)
LOC111195202 NA other downstream 2529525 9838936 ~ 9844659 (+)
LOC111195140 NA other downstream 2755441 10064852 ~ 10072047 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other downstream 2789135 10098546 ~ 10101547 (+)

Expression


Co-expression Network