G183312


Basic Information

Item Value
gene id G183312
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 8702426 ~ 8742973 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248275
ggcatcatgttctcctccaccagtcttacacactgcttttggatacttttatgcctttactcctggtgcaaaaaagaagttcattgattattatattccagaggtttttaatttggtaaaatcaaggaaaacatcatttttaaatggtttcttatttttttttccaccagaGCTGTACTGTACAGATGTGTTATCTGTCTGGcagtgtgaacagcaaaaaCAGACTGAATTTTGCTTTATCTAAACTAAATTTTTTGTATAGTTTCATGTCATCGTCCGTAATAGGACAACAGAAACCGAAACTAAAGCTTCAGGTGAAGCGCTGCTTTTTAGGATAATAGACCAGATTGAAAACGGTTTCAGTGTGAACGGCCTGAAATGAACCTCAGATTTCAGCCACTTTATCctcctgctgtgtgaatgtagcgcTTATTAGCGCTGCTCAGCTAACCCACTTGGACGGTGGACAGCGTGGTGTTTCCAGGTGTGAACGGGGCCTTGTGGGTTtgatgcatgtaaaaaaaaataataatacttgaATCagattttatgtgtgtgtgtaaatgtgtgtgttgagagtttGTATTACTGCTCTTCAGacgtgtttaatttttttaataaataaataaaaagagctgCCTGTACTAGACCTCAAAAAAACGACATAATTCAGTGTTAATATCAGTATTCAGTCGACGATCATGATGTTTTTGAGATGATTTTAGTTTTGTCTGTTATTTGTtgtctgctgttgttttttttgttaatattcgCACCCTGTTTCCAATATTTCAGGCGCAGCCACcagcatttgttttatttgttttaatttttttaatgttattttaattttaaataatggtgtacattattattgttattattattttattactgaatcatttctgtTTCATTCCTCTCTCTTTGCCAATCACGTGGTATCGGCTGTGGCACAACCTGCAACTTGTTGCACAAATGAAAGAAAACGGATGTAAAAATGAGAGTTTCTAACGTTTGCGGCATTATAATAGCGATTCTTATTTTACGTAGCTAAACTTTTACCCTTCATCGTTTCGTACGCAGGCTTTTGATTCACGCGATACGAAACgtttatgaaatatataaaaagaaatatatgaaGTGTATGATATGTTAGGACGTGTCCCAAACCCCTCTGTTCGTACCCCGTGTATGTTTCTATGTCTTTTAAAAAGACACCTGGCGAAGTCTGTATCAcgcatttttgtatttttgaataCGTGTACATATGGGTTCTATTTtgtttaagatttcagaaagagagagagagagagagagagagagagaaatatatactgTTTGAAAGTAACATTCAGCTGCTGTGAGTTTGAATGACTGACCAAGAATAAATACTGTAGCAACGGAACGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248275 True 1410 lncRNA 0.35 2 8702426 8742973

Neighbor

gene id symbol gene type direction distance location
LOC111195272 NA coding upstream 1187708 7512697 ~ 7514718 (+)
primpol NA coding upstream 1224159 7459929 ~ 7478267 (+)
LOC103031277 chrnb3a,LOC108410818,LOC107562617,LOC107702298,LOC107750476,LOC107655822,LOC107548357 coding upstream 1824105 6851222 ~ 6878321 (+)
LOC103022127 chrna6,LOC108412407,LOC107655806,LOC107709456,LOC107750436 coding upstream 1888901 6772571 ~ 6813525 (+)
LOC103027465 chrnb2a,LOC108412405,LOC107656869,LOC107548317,LOC107562601,LOC107702400 coding upstream 1969550 6704877 ~ 6732876 (+)
klhl2 klhl2,LOC107655955,LOC107745059,LOC107591556,LOC107702385 coding downstream 9154 8752127 ~ 8778943 (+)
msmo1 msmo1,LOC107750426,LOC107702386,LOC107655978 coding downstream 41907 8784880 ~ 8793907 (+)
cpe cpe,LOC107745061,LOC107548348,LOC107591555 coding downstream 58171 8801144 ~ 8846414 (+)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 coding downstream 347310 9090283 ~ 9184039 (+)
LOC103047154 ndst3,LOC108439183,LOC108260488,LOC107591550,LOC107551574,LOC107702380,LOC107750457 coding downstream 725601 9468574 ~ 9650975 (+)
G183293 NA non-coding upstream 1202944 7480385 ~ 7499482 (+)
G183289 ncapd3 non-coding upstream 1243722 7433978 ~ 7458704 (+)
G183251 wdr19 non-coding upstream 1285396 7411797 ~ 7417030 (+)
G183241 NA non-coding upstream 1301830 7347476 ~ 7400596 (+)
G183248 wdr19,LOC107591558 non-coding upstream 1305042 7394430 ~ 7397384 (+)
G183361 NA non-coding downstream 257882 9000855 ~ 9039749 (+)
G183376 NA non-coding downstream 437967 9180940 ~ 9512425 (+)
G183389 NA non-coding downstream 540636 9283609 ~ 9288142 (+)
G183391 NA non-coding downstream 562422 9305395 ~ 9306685 (+)
G183405 NA non-coding downstream 817737 9560710 ~ 9932597 (+)
G183215 NA other upstream 1485287 7214471 ~ 7217139 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 1692503 6897480 ~ 7009923 (+)
LOC103036850 NA other upstream 2037663 6523213 ~ 6664763 (+)
rnf38 rnf38,LOC107551561 other upstream 2204234 6445263 ~ 6498192 (+)
pax5 pax5 other upstream 2335236 6250774 ~ 6367190 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other downstream 127864 8870837 ~ 8983969 (+)
G183387 NA other downstream 468361 9211334 ~ 9293703 (+)
LOC111195202 NA other downstream 1095963 9838936 ~ 9844659 (+)
LOC111195140 NA other downstream 1321879 10064852 ~ 10072047 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other downstream 1355573 10098546 ~ 10101547 (+)

Expression


Co-expression Network