G183387


Basic Information

Item Value
gene id G183387
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 9211334 ~ 9293703 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248436
attattattattattctcggTAAATTTTATAAACAGTTTCTCCTCCTACAGTTTTCAAGCCAGAACCACGAAACTTCACAAGATGATAGAACCTATTGCCGCGGGGTGTGCTTGTGCTTTTCTAAGTGATCGGACCACCAGGGTCCGATTGGTGGTCCGCCAAAGTCAGATTTTTTCCCATAGACTTCCATTCACACTTTTTTCAAACGGCTCTAAAAGTCACAATTTTTGAGCTAGAACCACGAAATTCACAAGACATACAGAACTTGCAGAGACGTTTCAGACGATATGCTGATCTCACCGATACGATTTACGGTTTTCGTAAAATTATCGTACGAACTttccccataggaatgaatgggcgGAATGTTGgccatctcacacacaccagcCGATCCTGCGCACGGCCCCCCTCTCTGCCCTGCTCCTCAGTACTGTATCTGTATGGAGAAGATACTGCTGAACACAACCCACACCAGAACCaataccacactacacacacacacacaccacacatacaccacaccacacactccaccccacacactccacaccacacacactccacaccacacataccccacaccacacacactccaccccacacacactttaaaccacacttcaaaccacacataccccacaccacacacactccacaccacacaaaccccacaccacacacacttcaaaccccacaccacacacacttcaaacc
>TU248437
attattattattattctcggTAAATTTTATAAACAGTTTCTCCTCCTACAGTTTTCAAGCCAGAACCACGAAACTTCACAAGATGATAGAACCTATTGCCGCGGGGTGTGCTTGTGCTTTTCTAAGTGATCGGACCACCAGGGTCCGATTGGTGGTCCGCCAAAGTCAGATTTTTTCCCATAGACTTCCATTCACACTTTTTTCAAACGGCTCTAAAAGTCACAATTTTTGAGCTAGAACCACGAAATTCACAAGACATACAGAACTTGCAGAGACGTTTCAGACGATATGCTGATCTCACCGATACGATTTACGGTTTTCGTAAAATTATCGTACGAACTttccccataggaatgaatgggcgGAATGTTGgccatctcacacacaccagcCGATCCTGCGCACGGCCCCCCTCTCTGCCCTGCTCCTCAGTACTGTATCTGTATGGAGAAGATACTGCTGAACACAACCCACACCAGAACCaataccacactacacacaccccacaccatacac
>TU248438
attattattattattctcggTAAATTTTATAAACAGTTTCTCCTCCTACAGTTTTCAAGCCAGAACCACGAAACTTCACAAGATGATAGAACCTATTGCCGCGGGGTGTGCTTGTGCTTTTCTAAGTGATCGGACCACCAGGGTCCGATTGGTGGTCCGCCAAAGTCAGATTTTTTCCCATAGACTTCCATTCACACTTTTTTCAAACGGCTCTAAAAGTCACAATTTTTGAGCTAGAACCACGAAATTCACAAGACATACAGAACTTGCAGAGACGTTTCAGACGATATGCTGATCTCACCGATACGATTTACGGTTTTCGTAAAATTATCGTACGAACTttccccataggaatgaatgggcgGAATGTTGgccatctcacacacaccagcCGATCCTGCGCACGGCCCCCCTCTCTGCCCTGCTCCTCAGTACTGTATCTGTATGGAGAAGATACTGCTGAACACAACCCACACCAGAACCaataccacactacacacacaacacaccacacacagtccacaccacacataccccacaccacac
>TU248439
attattattattattctcggTAAATTTTATAAACAGTTTCTCCTCCTACAGTTTTCAAGCCAGAACCACGAAACTTCACAAGATGATAGAACCTATTGCCGCGGGGTGTGCTTGTGCTTTTCTAAGTGATCGGACCACCAGGGTCCGATTGGTGGTCCGCCAAAGTCAGATTTTTTCCCATAGACTTCCATTCACACTTTTTTCAAACGGCTCTAAAAGTCACAATTTTTGAGCTAGAACCACGAAATTCACAAGACATACAGAACTTGCAGAGACGTTTCAGACGATATGCTGATCTCACCGATACGATTTACGGTTTTCGTAAAATTATCGTACGAACTttccccataggaatgaatgggcgGAATGTTGgccatctcacacacaccagcCGATCCTGCGCACGGCCCCCCTCTCTGCCCTGCTCCTCAGTACTGTATCTGTATGGAGAAGATACTGCTGAACACAACCCACACCAGAACCaataccacactacacacacacacacaccacacatacaccacaccacacactccaccccacacactccacaccacacataccccacaccacaccacacactccacaccacacataccccacaccacacacactccacaccacacataccccacaccacacacactccaccccacacacactttaaaccacacttcaaaccacacataccccacaccacacacactccacaccacacataccccacacacacactccacaccacacaaaccccacaccacacacacttcaaaccacacataccccacaccacacacacttcaaaccacacataccccacaccacacacactccacaccacacaaaccccacaccacacacactttaaaccacacacactccacagctcacataccccacaccacacactccaccccacacataccacacacttcacaccccacaccacacactccacaccacacataccccacaccacatacactttaaaccacacacaaacTCCACAGCTCatataccccacaccacacacactccacaccacacataccccacaccacacacaccccataccacacacacactccac
>TU248440
GTCAAGCTTGAACCACGAAACTTCACAAGATGATAGAACCTATTGCCGCGGGGTGTGCTTGTGCTTTTCTAAGTGATCGGACCACCAGGGTCCGATTGGTGGTCCGCCAAAGTCAGATTTTTTCCCATAGACTTCCATTCACACTTTTTTCAAACGGCTCTAAAAGTCACAATTTTTGAGCTAGAACCACGAAATTCACAAGACATACAGAACTTGCAGAGACGTTTCAGACGATATGCTGATCTCACCGATACGATTTACGGTTTTCGTAAAATTATCGTACGAACTttccccataggaatgaatgggcgGAATGTTGgccatctcacacacaccagcCGATCCTGCGCACGGCCCCCCTCTCTGCCCTGCTCCTCAGTACTGTATCTGTATGGAGAAGATACTGCTGAACACAACCCACACCAGAACCaataccacactacacacacacaccacacaccacacatacaccacaccacacacacttcaaaccacacataccccac
>TU248442
cacacaccacacacacttcaaaccacacaaaccccacaccacacacacttcaaaccacacataccccacaccacactcacttcaaaccacacataccccacaccacactcacttcaaaccacacataccccacaccacacacacttcaaaccacacaaaccccacaccacacacacttcaaaccacacataccccacaccacacacacttcaaaccacacataccccacaccacacacactccacagctcacatagcccacaccacacacacacaccaccccacacataccacacacaattcacaccccacaccacacactccacaccacacacactttaaaccacacacacactcgataGCTCatataccccacaccacacacacttcacaccacacataccccacaccccacacactccataccacacacacactccacagctcacataccccacaccacacacactccaccccacacataccacacacacttcacaccccacaccacacataccccacactctccataccacacacacacttccacagctcacataccccacaccacacac
>TU248445
accacacacacactccacagctcacataccccacaccacacactccaccccacacataccacacacttcacaccccacaccacacactccacaccacacataccccacaccacatacactttaaaccacacacactccacagctcacataccccacaccacacactccaccccacacataccacacacttcacaccccacaccacacactccacaccacacataccccacaccacatacactttaaaccacacacaaacTCCACAGCTCatataccccacaccacacacactccacaccacacataccccacaccacacacaccccataccacacacacactccac
>TU248447
cacacaccacacacacttcaaaccacacaaaccccacaccacacacacttcaaaccacacataccccacaccacactcacttcaaaccacacataccccacaccacactcacttcaaaccacacataccccacaccacacacacttcaaaccacacaaaccccacaccacacacacttcaaaccacacataccccacaccacacacacttcaaaccacacataccccacaccacacacactccacagctcacatagcccacaccacacacacacaccaccccacacataccacacacaattcacaccccacaccacacactccacaccacacataccccacaccacacacactttaaaccacacacactccacagctcacatagcccacaccacacacactccaccccacacacacttcacaccccacaccacacacactttaaaccacacacacactccacagctcacatacaccacacacactccaccccacacataccacacacacttcacaccccacaccacacataccccacactctccataccacacacacacttccacagctcacataccccacaccacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248436 False 718 lncRNA 0.47 3 9280704 9282605
TU248437 False 516 lncRNA 0.45 2 9280704 9292703
TU248438 False 546 lncRNA 0.45 2 9280704 9283499
TU248439 True 1090 TUCP 0.49 2 9280704 9282934
TU248440 False 506 lncRNA 0.47 3 9211334 9290785
TU248442 False 574 lncRNA 0.52 2 9283127 9293703
TU248445 False 346 lncRNA 0.53 2 9282137 9282934
TU248447 False 590 lncRNA 0.52 3 9283127 9293703

Neighbor

gene id symbol gene type direction distance location
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 coding upstream 27295 9090283 ~ 9184039 (+)
cpe cpe,LOC107745061,LOC107548348,LOC107591555 coding upstream 364920 8801144 ~ 8846414 (+)
msmo1 msmo1,LOC107750426,LOC107702386,LOC107655978 coding upstream 417427 8784880 ~ 8793907 (+)
klhl2 klhl2,LOC107655955,LOC107745059,LOC107591556,LOC107702385 coding upstream 432391 8752127 ~ 8778943 (+)
LOC103036243 LOC108439191 coding upstream 471471 8627354 ~ 8739863 (+)
LOC103047154 ndst3,LOC108439183,LOC108260488,LOC107591550,LOC107551574,LOC107702380,LOC107750457 coding downstream 174871 9468574 ~ 9650975 (+)
LOC111195203 LOC108411626 coding downstream 562109 9855812 ~ 9865765 (+)
LOC111195273 NA coding downstream 690909 9984612 ~ 9985691 (+)
LOC111195205 NA coding downstream 701906 9995609 ~ 9996842 (+)
LOC111195208 LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841 coding downstream 810151 10103854 ~ 10104501 (+)
G183361 NA non-coding upstream 171585 9000855 ~ 9039749 (+)
G183312 NA non-coding upstream 468361 8702426 ~ 8742973 (+)
G183293 NA non-coding upstream 1711852 7480385 ~ 7499482 (+)
G183289 ncapd3 non-coding upstream 1752630 7433978 ~ 7458704 (+)
G183251 wdr19 non-coding upstream 1794304 7411797 ~ 7417030 (+)
G183391 NA non-coding downstream 11692 9305395 ~ 9306685 (+)
G183405 NA non-coding downstream 267007 9560710 ~ 9932597 (+)
G183406 NA non-coding downstream 274469 9568172 ~ 9570981 (+)
G183412 NA non-coding downstream 287370 9581073 ~ 9581376 (+)
G183395 NA non-coding downstream 360564 9654267 ~ 9657602 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other upstream 227365 8870837 ~ 8983969 (+)
G183215 NA other upstream 1994195 7214471 ~ 7217139 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 2201411 6897480 ~ 7009923 (+)
LOC103036850 NA other upstream 2546571 6523213 ~ 6664763 (+)
rnf38 rnf38,LOC107551561 other upstream 2713142 6445263 ~ 6498192 (+)
LOC111195202 NA other downstream 545233 9838936 ~ 9844659 (+)
LOC111195140 NA other downstream 771149 10064852 ~ 10072047 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other downstream 804843 10098546 ~ 10101547 (+)
G183671 NA other downstream 816163 10109866 ~ 10110741 (+)
LOC111195212 LOC108414267,LOC106946373,LOC103130468,LOC102227983,LOC108269716,LOC108261415,LOC105936005,LOC107386469,LOC107577828,LOC107569598,LOC107677420 other downstream 851750 10145453 ~ 10171103 (+)

Expression


Co-expression Network