G183389


Basic Information

Item Value
gene id G183389
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 9283609 ~ 9288142 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU248449
tagcaaccagttagcaacaccttagcaaccacctggaaaacattagcaactgcctagcaacagcttagcaaccacttagcaaccacatggaaaacgttagcaactgcctaacaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacgtggaaaacgttagcaactgcctagcaaccacttagtaaccactttagaaatgatagcaactgcctagcaaccacttagcaaacacttagcaaccacatggaaaacgttagcaactgcctagcaaccactgagcaaccacctggaaaacattagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacacct
>TU248451
accacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccactgagcaaccacctggaaaacattagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagc
>TU248453
ccaccccacacataccacacacagtTCACACCACAcctaccccacaccacacacactccacacctgacacaccccacaccacacacactccataccacacacacacacactccaccgcacaccccacaccacaccacacactctacacaccccACAAACtccacacccaacacactccacaccacacacactctacagtcCACACcacaaccagttagcaacacctttgccacaccacaccacacacacgccccacaccacacacgccccacaccacacacgctcaacaccacacacactccacaccacacacactctacaacccacaccacaaccagttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaatcacttagcaaccactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248449 True 539 lncRNA 0.47 3 9284119 9287880
TU248451 False 430 lncRNA 0.49 3 9287251 9288142
TU248453 False 405 lncRNA 0.55 2 9283609 9284043

Neighbor

gene id symbol gene type direction distance location
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 coding upstream 99570 9090283 ~ 9184039 (+)
cpe cpe,LOC107745061,LOC107548348,LOC107591555 coding upstream 437195 8801144 ~ 8846414 (+)
msmo1 msmo1,LOC107750426,LOC107702386,LOC107655978 coding upstream 489702 8784880 ~ 8793907 (+)
klhl2 klhl2,LOC107655955,LOC107745059,LOC107591556,LOC107702385 coding upstream 504666 8752127 ~ 8778943 (+)
LOC103036243 LOC108439191 coding upstream 543746 8627354 ~ 8739863 (+)
LOC103047154 ndst3,LOC108439183,LOC108260488,LOC107591550,LOC107551574,LOC107702380,LOC107750457 coding downstream 180432 9468574 ~ 9650975 (+)
LOC111195203 LOC108411626 coding downstream 567670 9855812 ~ 9865765 (+)
LOC111195273 NA coding downstream 696470 9984612 ~ 9985691 (+)
LOC111195205 NA coding downstream 707467 9995609 ~ 9996842 (+)
LOC111195208 LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841 coding downstream 815712 10103854 ~ 10104501 (+)
G183361 NA non-coding upstream 243860 9000855 ~ 9039749 (+)
G183312 NA non-coding upstream 540636 8702426 ~ 8742973 (+)
G183293 NA non-coding upstream 1784127 7480385 ~ 7499482 (+)
G183289 ncapd3 non-coding upstream 1824905 7433978 ~ 7458704 (+)
G183251 wdr19 non-coding upstream 1866579 7411797 ~ 7417030 (+)
G183391 NA non-coding downstream 17253 9305395 ~ 9306685 (+)
G183405 NA non-coding downstream 272568 9560710 ~ 9932597 (+)
G183406 NA non-coding downstream 280030 9568172 ~ 9570981 (+)
G183412 NA non-coding downstream 292931 9581073 ~ 9581376 (+)
G183395 NA non-coding downstream 366125 9654267 ~ 9657602 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other upstream 299640 8870837 ~ 8983969 (+)
G183215 NA other upstream 2066470 7214471 ~ 7217139 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 2273686 6897480 ~ 7009923 (+)
LOC103036850 NA other upstream 2618846 6523213 ~ 6664763 (+)
rnf38 rnf38,LOC107551561 other upstream 2785417 6445263 ~ 6498192 (+)
LOC111195202 NA other downstream 550794 9838936 ~ 9844659 (+)
LOC111195140 NA other downstream 776710 10064852 ~ 10072047 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other downstream 810404 10098546 ~ 10101547 (+)
G183671 NA other downstream 821724 10109866 ~ 10110741 (+)
LOC111195212 LOC108414267,LOC106946373,LOC103130468,LOC102227983,LOC108269716,LOC108261415,LOC105936005,LOC107386469,LOC107577828,LOC107569598,LOC107677420 other downstream 857311 10145453 ~ 10171103 (+)

Expression


Co-expression Network